mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,348,705 | 0 | A | G | 51.1% | 1.3 / 62.4 | 48 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 1,327,121 | 0 | C | T | 48.4% | 29.3 / 84.1 | 62 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 699,722 | 0 | A | G | 42.9% | 17.6 / 48.3 | 42 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | NC_002947 | 358,085 | 0 | A | G | 33.3% | 15.0 / 14.0 | 24 | intergenic (+53/‑77) | tdcG‑I/PP_5441 | L‑serine dehydratase/hypothetical protein |
| * | NC_002947 | 1,703,252 | 0 | C | T | 29.2% | 28.7 / 10.3 | 25 | intergenic (+101/‑66) | lysS/PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| * | NC_002947 | 358,091 | 0 | G | A | 27.3% | 25.0 / 10.6 | 24 | intergenic (+59/‑71) | tdcG‑I/PP_5441 | L‑serine dehydratase/hypothetical protein |
| * | NC_002947 | 337,816 | 1 | . | A | 26.7% | 31.0 / 14.0 | 15 | intergenic (‑66/+63) | PP_0279/PP_0280 | hypothetical protein/amino acid ABC transporter permease |
| * | NC_002947 | 195,634 | 0 | C | T | 25.5% | 76.1 / 24.8 | 48 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 196,795 | 0 | G | C | 25.0% | 37.1 / 14.0 | 24 | T767T (ACG→ACC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 358,090 | 0 | T | C | 25.0% | 31.6 / 11.4 | 24 | intergenic (+58/‑72) | tdcG‑I/PP_5441 | L‑serine dehydratase/hypothetical protein |
| * | NC_002947 | 197,590 | 0 | T | C | 23.5% | 58.3 / 15.0 | 36 | D1032D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 197,572 | 0 | G | A | 22.5% | 71.0 / 16.7 | 41 | K1026K (AAG→AAA) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 196,351 | 0 | C | G | 22.2% | 66.5 / 17.3 | 36 | T619T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 358,094 | 0 | A | G | 22.2% | 45.3 / 10.6 | 27 | intergenic (+62/‑68) | tdcG‑I/PP_5441 | L‑serine dehydratase/hypothetical protein |
| * | NC_002947 | 196,390 | 0 | T | C | 20.6% | 60.5 / 11.9 | 36 | D632D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| Marginal new junction evidence (lowest skew 10 of 76 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 699672 | 81 (2.700) | 0 (0.000) +29 bp |
4/234 | 2.9 | 0.0% | intergenic (+65/‑179) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| ? | NC_002947 | 5310821 = | 35 (1.170) | intergenic (‑232/+3) | PP_23SG/PP_t51 | 23S ribosomal RNA/tRNA‑Ala | |||||
| * | ? | NC_002947 | = 3859573 | 23 (0.770) | 5 (0.180) | 5/276 | 3.0 | 18.3% | coding (407/753 nt) | cobM | precorrin‑4 C(11)‑methyltransferase |
| ? | NC_002947 | = 3859599 | 23 (0.810) | coding (433/753 nt) | cobM | precorrin‑4 C(11)‑methyltransferase | |||||
| * | ? | NC_002947 | 742915 = | NA (NA) | 7 (0.240) | 5/280 | 3.1 | NA | coding (1016/1422 nt) | PP_0635 | group II intron‑encoding maturase |
| ? | NC_002947 | 742945 = | NA (NA) | coding (1046/1422 nt) | PP_0635 | group II intron‑encoding maturase | |||||
| * | ? | NC_002947 | = 5988757 | 34 (1.130) | 4 (0.140) | 4/276 | 3.4 | 11.9% | intergenic (+51/‑495) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | NC_002947 | 5988979 = | 27 (0.950) | intergenic (+273/‑273) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947 | = 1970238 | 24 (0.800) | 4 (0.140) | 4/276 | 3.4 | 17.5% | coding (609/1077 nt) | mtnA | methylthioribose‑1‑phosphate isomerase |
| ? | NC_002947 | = 1970332 | 15 (0.530) | coding (703/1077 nt) | mtnA | methylthioribose‑1‑phosphate isomerase | |||||
| * | ? | NC_002947 | 162900 = | 44 (1.470) | 5 (0.180) | 4/278 | 3.4 | 11.5% | coding (934/1494 nt) | scpC | propionyl‑CoA:succinate CoA transferase |
| ? | NC_002947 | 162945 = | 35 (1.230) | coding (889/1494 nt) | scpC | propionyl‑CoA:succinate CoA transferase | |||||
| * | ? | NC_002947 | = 5943622 | 28 (0.930) | 3 (0.120) | 3/248 | 3.5 | 12.1% | intergenic (+30/+55) | PP_5210/PP_5211 | alcohol dehydrogenase/ChaC‑related protein |
| ? | NC_002947 | = 5943643 | 20 (0.790) | intergenic (+51/+34) | PP_5210/PP_5211 | alcohol dehydrogenase/ChaC‑related protein | |||||
| * | ? | NC_002947 | 5819281 = | 29 (0.970) | 4 (0.140) | 4/280 | 3.5 | 11.1% | coding (550/819 nt) | proI | pyrroline‑5‑carboxylate reductase |
| ? | NC_002947 | 5819334 = | 36 (1.250) | coding (603/819 nt) | proI | pyrroline‑5‑carboxylate reductase | |||||
| * | ? | NC_002947 | 5692205 = | 26 (0.870) | 4 (0.140) | 4/284 | 3.5 | 14.5% | coding (580/906 nt) | PP_4994 | hypothetical protein |
| ? | NC_002947 | 5692230 = | 22 (0.760) | coding (605/906 nt) | PP_4994 | hypothetical protein | |||||
| * | ? | NC_002947 | = 5890042 | 32 (1.070) | 3 (0.110) | 3/268 | 3.8 | 8.2% | coding (1697/2367 nt) | PP_5164 | penicillin amidase family protein |
| ? | NC_002947 | = 5890104 | 38 (1.380) | coding (1759/2367 nt) | PP_5164 | penicillin amidase family protein | |||||