| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 486412 = | 16 (0.280) | 3 (0.060) | 3/228 | NT | 10.2% | intergenic (‑98/+100) | apaG/rsmA | Co(2+)/Mg(2+) efflux protein/ribosomal RNA small subunit methyltransferase A |
| ? | NC_002947 | 486501 = | 39 (0.790) | intergenic (‑187/+11) | apaG/rsmA | Co(2+)/Mg(2+) efflux protein/ribosomal RNA small subunit methyltransferase A | |||||
ACAGCTCGACCTGGCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/486575‑486412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaagaggccggTACGGGCTAAATCAGGCTTG‑TTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTG > NC_002947/486501‑486644 ACAGCTCGACCTGGCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTAC > 1:320624/1‑149 GCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCC > 6:243464/1‑149 GCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGC < 3:9741/148‑1 GCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGG < 5:79594/147‑1 AGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGG > 8:259407/1‑149 CCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCC > 7:207230/1‑92 CCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCC < 8:207230/92‑1 TTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTG‑TTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTC > 5:138493/1‑149 GGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTG‑TTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGC > 6:75941/1‑149 TCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTG‑TTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAG < 5:75941/149‑1 AGAGGCCGGTACGGGCTAAATCAGGCTTG‑TTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCAT < 8:175729/149‑1 GAGGCCGGTACGGGCTAAATCAGGCTTG‑TTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATG < 5:264375/149‑1 GAGGCCGGTACGGGCTAAATCAGGCTTG‑TTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATG < 2:73824/149‑1 GAGGCCGGTACGGGCTAAATCAGGCTTG‑TTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATG < 8:225794/149‑1 GGCCGGTACGGGCTAAATCAGGCTTGTTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGGTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCTATGGCGGCGCTGTCCAGAAGGCCTTTCATGt > 1:21758/1‑148 GCCGGTACGGGCTAAATCAGGCTTG‑TTGCTGATCCGCCAGTTGGTCAGCGAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTG < 6:138493/149‑1 GGTACGGGCTAAATCAGGCTTG‑TTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCT > 3:158782/1‑137 GGTACGGGCTAAATCAGGCTTG‑TTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCT < 4:158782/137‑1 ACAGCTCGACCTGGCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/486575‑486412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaagaggccggTACGGGCTAAATCAGGCTTG‑TTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTG > NC_002947/486501‑486644 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |