New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 486412 = | 16 (0.280) | 3 (0.060) | 3/228 | NT | 10.2% | intergenic (‑98/+100) | apaG/rsmA | Co(2+)/Mg(2+) efflux protein/ribosomal RNA small subunit methyltransferase A |
? | NC_002947 | 486501 = | 39 (0.790) | intergenic (‑187/+11) | apaG/rsmA | Co(2+)/Mg(2+) efflux protein/ribosomal RNA small subunit methyltransferase A |
TAGCGGGTCACGACGCTGACGTCGATTTGATAGCGGGGGTCGGACATGCAAGGGCCTTGGGCGAACTGACGCAATAATGCAGTCTAGGCCATTGGGAGGGGGGAGGGCCAGCGGTGATCGGGCTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCT > NC_002947/486268‑486560 | caccatgaaaggcctgctggacagcgccgccatcgaggctgctggcgttgatggcagcctgcgccctgaacagctcgacctggcagccttcgtgcgcctcgctgaccaactggcggatcagcaacaagcctgatttagcccgtaCCGGc < 6:138493‑M1/5‑1 (MQ=255) acatgaaaggccttctggacagcgccgccatagaggctgctggcgttgatggcagcctgcgccctgaacacctcgacctggcagccttcgtgcgcctggctgaccaactggcggatcagcaaacaagcctgatttagcccgtaCCGGcc > 1:21758‑M1/144‑149 (MQ=255) catgaaaggcctgctggacagcgccgccatcgaggctgctggcgttgatggcagcctgcgccctgaacagctcgacctggcagccttcgtgcgcctggctgaccaactggcggatcagcaacaagcctgatttagcccgtaCCGGCctc < 8:225794‑M1/8‑1 (MQ=255) catgaaaggcctgctggacagcgccgccatcgaggctgctggcgttgatggcagcctgcgccctgaacagctcgacctggcagccttcgtgcgcctggctgaccaactggcggatcagcaacaagcctgatttagcccgtaCCGGCctc < 2:73824‑M1/8‑1 (MQ=255) catgaaaggcctgctggacagcgccgccatcgaggctgctggcgttgatggcagcctgcgccctgaacagctcgacctggcagccttcgtgcgcctggctgaccaactggcggatcagcaacaagcctgatttagcccgtaCCGGCctc < 5:264375‑M1/8‑1 (MQ=255) atgaaaggcctgctggacagcgccgccatcgaggctgctggcgttgatggcagcctgcgccctgaacagctcgacctggcagccttcgtgcgcctggctgaccaactggcggatcagcaacaagcctgatttagcccgtaCCGGCctct < 8:175729‑M1/9‑1 (MQ=255) aggcctgctggacagcgccgccatcgaggctgctggcgttgatggcagcctgcgccctgaacagctcgacctggcagccttcgtgcgcctggctgaccaactggcggatcagcaacaagcctgatttagcccgtacc > 3:158782‑M1/136‑137 (MQ=255) aggcctgctggacagcgccgccatcgaggctgctggcgttgatggcagcctgcgccctgaacagctcgacctggcagccttcgtgcgcctggctgaccaactggcggatcagcaacaagcctgatttagcccgtacc < 4:158782‑M1/2‑1 (MQ=255) ctgcgccctgaacagctcgacctggcagccttcgtgcgcctggctgaccaactggcggatcagcaacaagcctgatttagcccgtaCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGa < 5:75941‑M1/63‑1 (MQ=255) gccctgaacagctcgacctggcagccttcgtgcgcctggctgaccaactggcggatcagcaacaagcctgatttagcccgtaCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATccc > 6:75941‑M1/83‑149 (MQ=255) tGACGCAATAATGCAGTCTAGGCCATTGGGAGGGGGGAGGGCCAGCGGTGATCGGGCTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTtgt > 5:243464/1‑149 (MQ=255) aCGCAATAATGCAGTCTAGGCCATTGGGAGGGGGGAGGGCCAGCGGTGATCGGGCTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTgg > 5:73661/1‑149 (MQ=255) gCAATAATGCAGTCTAGGCCATTGGGAGGGGGGAGGGCCAGCGGTGATCGGGCTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGcc > 7:259407/1‑149 (MQ=255) gCAATAATGCAGTCTAGGCCATTGGGAGGGGGGAGGCCCAGCGGTGATCGGGCTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGcc > 5:298080/1‑149 (MQ=255) gacctggcagccttcgtgcgcctggctgaccaactggcggatcagcaacaagcctgatttagcccgtaCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGaa > 5:138493‑M1/69‑149 (MQ=255) tCTAGGCCATTGGGAGGGGGGAGGGCCAGCGGTGATCGGGCTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCAAAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAATAGGcc > 6:264375/1‑149 (MQ=255) cATTGGGAGGGGGGAGGGCCAGCGGTGATCGGGCTTGGGGGGGGAGTTGTCAGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAATGCGTCCCACAGCATTTGAGGGTTGTGAGATCACTTGTGGCCACCGAAGAGGCCGGTActg > 2:353292/1‑147 (MQ=37) aTTGGGAGGGGGGAGGGCCAGCGGTGATCGGGCTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACggg > 2:320624/1‑149 (MQ=255) aGCGGTGATCGGGCTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCt > 5:201108/1‑149 (MQ=255) gCTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGtt > 1:98039/1‑149 (MQ=255) cTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTg < 6:201108/149‑1 (MQ=255) gggggggTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACggg < 6:299154/113‑1 (MQ=255) gggggggTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACggg > 5:299154/1‑113 (MQ=255) gcccggcgttgtCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCCCCAGTTGGTCAg < 6:73661/142‑1 (MQ=255) gggTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCGTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGc < 2:182622/127‑1 (MQ=255) gggTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGc > 1:182622/1‑127 (MQ=255) gtCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCAc > 5:80085/1‑149 (MQ=255) cTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCg > 6:179522/1‑93 (MQ=255) cTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCg < 5:179522/93‑1 (MQ=255) CCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCt > 8:259407‑M1/1‑149 (MQ=255) | TAGCGGGTCACGACGCTGACGTCGATTTGATAGCGGGGGTCGGACATGCAAGGGCCTTGGGCGAACTGACGCAATAATGCAGTCTAGGCCATTGGGAGGGGGGAGGGCCAGCGGTGATCGGGCTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCT > NC_002947/486268‑486560 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |