New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 556449	55 (0.970)	4 (0.080)	4/244	NT	6.9%	coding (51/540 nt)	rplE	50S ribosomal protein L5
	?	NC_002947	= 556455	57 (1.070)					coding (57/540 nt)	rplE	50S ribosomal protein L5

GGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATGCTTGAACACTGCTAGGTAGAAGACCATGGCACGACTGAAAGAGATTTACCGGAACGAAATCGCTCCTAAGCTTAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/556297‑556449 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcttaagTTCTTCCTTAAGCTTAGGAGCGATTTCGTTCCGGTAAATCTCTTTCAGTCGTGCCATGGTCTTCTACCTAGCAGTGTTCAAGCATCAACCGCTTTTTGGGTCGACTTGAAGACACGAATTTTTTTACCGTCTTCTACTTTGAAA  <  NC_002947/556455‑556312                                                                                                                                                                                                                                                                                                           GGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATGCTTGAACACTGCTAGGTAGAAGACCATGGCACGACTGAAAGAGATTTACCGGAACGAAATCGCTCCTAAGCT                                                                                                                                                      >  6:336256/1‑149      ACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATGCTTGAACACTGCTAGGTAGAAGACCATGGCACGACTGAAAGAGATTTACCGGAACGAAATCGCTCCTAAGCTTAAG                                                                                                                                                  <  6:171071/148‑1      ACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATGCTTGAACACTGCTAGGTAGAAGACCATGGCACGACTGAAAGAGATTTACCGGAACGAAATCGCTCCTAAGCTTAA                                                                                                                                                   <  2:328226/147‑1                    AAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATGCTTGAACACTGCTAGGTAGAAGACCATGGCACGACTGAAAGAGATTTACCGGAACGAAATCGCTCCTAAGCTTAAGTTCTTCCTTAAGCTT                                                                                                                                   <  4:117969/149‑1                                                                                              TAGAAGACCATGGCACGACTGAAAGAGATTTACCGGAACGAAATCGCTCCTAAGCTTAAGTTCTTCCTTAAGCTTAG                                                                                                                                 <  1:17846/77‑1                                                                                              TAGAAGACCATGGCACGACTGAAAGAGATTTACCGGAACGAAATCGCTCCTAAGCTTAAGTTCTTCCTTAAGCTTAG                                                                                                                                 >  2:17846/1‑77                                                                                                                                 GAACGAAATCGCTCCTAAGCTTAAGGAAGAACTTAAGCTTAGGAGCGATTTCGTTCCGGTAAATCTCTTTCAGTCGTGCCATGGTCTTCTACCTAGCAGTGTTCAAGCATCAACCGCTTTTTGGGTCGACTTGAAGACACGAATTTTTT                      >  5:336256/1‑149                                                                                                                                                  AGCTTAAGTTCTTCCTTAAGCTTAGGAGCGATTTCGTTCCGGTAAATCTCTTTCAGTCGTGCCATGGTCTTCTACCTAGCAGTGTTCAAGCATCAACCGCTTTTTGGGTCGACTTGAAGACACGAATTTTTTTACCGTCTTCTACTTT      >  3:154616/1‑148                                                                                                                                                   GCTTAAGTTCTTCCTTAAGCTTAGGAGCGATTTCGTTCCGGTAAATCTCTTTCAGTCGTGCCATGGTCTTCTACCTAGCAGTGTTCAAGCATCAACCGCTTTTTGGGTCGACTTGAAGACACGAATTTTTTTACCGTCTTCTACTTTG     >  2:361834/1‑148                                                                                                                                                    CTTAAGTTCTTCCTTAAGCTTAGGAGCGATTTCGTTCCGGTAAATCTCTTTCAGTCGTGCCATGGTCTTCTACCTAGCAGTGTTCAAGCATCAACCGCTTTTTGGGTCGACTTGAAGACACGAATTTTTTTACCGTCTTCTACTTTGAA   <  2:32652/149‑1                                                                                                                                                     TTAAGTTCTTCCTTAAGCTTAGGAGCGATTTCGTTCCGGTAAATCTCTTTCAGTCGTGCCATGGTCTTCTACCTAGCAGTGTTCAAGCATCAACCGCTTTTTGGGTCGACTTGAAGACACGAATTTTTTTACCGTCTTCTACTTTGAAA  >  2:220155/1‑149                                                                                                                                                                                                                                                                                                           GGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATGCTTGAACACTGCTAGGTAGAAGACCATGGCACGACTGAAAGAGATTTACCGGAACGAAATCGCTCCTAAGCTTAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/556297‑556449 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcttaagTTCTTCCTTAAGCTTAGGAGCGATTTCGTTCCGGTAAATCTCTTTCAGTCGTGCCATGGTCTTCTACCTAGCAGTGTTCAAGCATCAACCGCTTTTTGGGTCGACTTGAAGACACGAATTTTTTTACCGTCTTCTACTTTGAAA  <  NC_002947/556455‑556312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.