New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 726911 = | 42 (0.740) | 3 (0.060) | 3/240 | NT | 6.3% | intergenic (‑158/+109) | PP_0620/PP_0621 | GntR family transcriptional regulator/hypothetical protein |
? | NC_002947 | 726968 = | 51 (0.980) | intergenic (‑215/+52) | PP_0620/PP_0621 | GntR family transcriptional regulator/hypothetical protein |
GTATTGCAGCCAGGCCCACCTGCAGCAGGGCCCTGGCCACCAAGGCTGAACACGATGTCTGTTCAATCCTGAAACCAATTCGAAATCTGTGGGAGCGGGCTTGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/727068‑726911 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcaAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCTGGCTGCAATACCACTCATTGCCCTGCTGCAGCGCCCGGTCGTTGGGCAGGTGCACG > NC_002947/726968‑727113 GTATTGCAGCCAGGCCCACCTGCAGCAGGGCCCTGGCCACCAAGGCTGAACACGATGTCTGTTCAATCCTGAAACCAATTCGAAATCTGTGGGAGCGGGCTTGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGT > 6:300211/1‑149 ATTGCAGCCAGGCCCACCTGCAGCAGGGCCCTGGCCACCAAGGCTGAACACGATGTCTGTTCAATCCTGAAACCAATTCGAAATCTGTGGGAGCGGTCTTGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTC > 6:226775/1‑149 ATTGCAGCCAGGCCCACCTGCAGCAGGGCCCTGGCCACCAAGGCTGAACACGATGTCTGTTCAATCCTGAAACCAATTCGAAATCTGTGGGAGCGGGCTTGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTC > 2:69658/1‑149 TTGCAGCCAGGCCCACCTGCAGCAGGGCCCTGGCCACCAAGGCTGAACACGATGTCTGTTCAATCCTGAAACCAATTCGAAATCTGTGGGAGCGGGCTTGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCG > 6:155916/1‑149 GCAGCCAGGCCCACCTGCAGCAGGGCCCTGGCCACCAAGGCTGAACACGATGTCTGTTCAATCCTGAAACCAATTCGAAATCTGTGGGAGCGGGCTTGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCG > 3:311936/1‑149 CAGCCAGGCCCACCTGCAGCAGGGCCCTGGCCACCAAGGCTGAACACGGTGTCTGTTCAATCCTGAAACCAATTCGAAATCTGTGGGAGCGGGCTTGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCG < 5:3330/148‑1 CAGCCAGGCCCACCTGCAGCAGGGCCCTGGCCACCAAGGCTGAACACGATGTCTGTTCAATCCTGAAACCAATTCGAAATCTGTGGGAGCGGGCTTGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGG > 6:4203/1‑149 AGCCAGGCCCACCTGCAGCAGGGCCCTGGCCACCAAGGCTGAACACGATGTCTGTTCAATCCTGAAACCAATTCGAAATCTGTGGGAGCGGGCTTGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGGG < 2:41656/149‑1 CCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCT > 5:362197/1‑144 CCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCT < 6:362197/144‑1 GCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCTGGCTGC > 3:169271/1‑148 CGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCTGGCTGCAATACCACTCATTGCCCTGCTGCAGCGCCCGGTCGTTGGGCAG < 6:350300/147‑1 GGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCTGGCTGCAATACCACTCATTGCCCTGCTGCAGCGCCCGGTCGTTGGGCAGGTGCAC < 7:194426/149‑1 GCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCA < 5:64650/58‑1 GCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCA > 6:64650/1‑58 GCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGACTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCTGGCTGCAATACCACTCATTGCCCTGCTGCAGCGCCCGGTCGTTGGGCAGGTGCACG > 5:202606/1‑149 GTATTGCAGCCAGGCCCACCTGCAGCAGGGCCCTGGCCACCAAGGCTGAACACGATGTCTGTTCAATCCTGAAACCAATTCGAAATCTGTGGGAGCGGGCTTGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/727068‑726911 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcaAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCTGGCTGCAATACCACTCATTGCCCTGCTGCAGCGCCCGGTCGTTGGGCAGGTGCACG > NC_002947/726968‑727113 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |