New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	726911 =	42 (0.740)	3 (0.060)	3/240	NT	6.3%	intergenic (‑158/+109)	PP_0620/PP_0621	GntR family transcriptional regulator/hypothetical protein
	?	NC_002947	726968 =	51 (0.980)					intergenic (‑215/+52)	PP_0620/PP_0621	GntR family transcriptional regulator/hypothetical protein

TCATATTTATGCGGATAAATAGGATTTAGCGAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCTG  >  NC_002947/726765‑727058                                                                                                                                                   |                                                                                                                                                     cgtgcacctgcccaacgaccgggcgctgcagcagggcaatgagtggtattgcagccaggcccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcagtcctgaaaccaattcgaaatctgtgggagcgggctTGc                                                                                                                                                    >  5:202606‑M1/147‑149 (MQ=255)  gtgcacctgcccaacgaccgggcgctgcagcagggcaatgagtggtattgcagccaggcccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcaatcctgaaaccaattcgaaatctgtgggagcgggctTGcc                                                                                                                                                   <  7:194426‑M1/4‑1 (MQ=255)     atTTATGCGGATAAATAGGATTTAGCGAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCcgc                                                                                                                                                >  4:237840/1‑149 (MQ=255)        ctgcccaacgaccgggcgctgcagcagggcaatgagtggtattgcagccaggcccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcaatcctgaaaccaattcgaaatctgtgggagcgggctTGCCcgcg                                                                                                                                               <  6:350300‑M1/8‑1 (MQ=255)               aTAAATAGGATTTAGCGAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGc                                                                                                                                      >  5:201441/1‑149 (MQ=255)                    tAGGATTTAGCGAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑Gc                                                                                                                                >  3:204696/1‑149 (MQ=255)                    tAGGATTTAGCGAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCAGCGAACACCGGCGAA‑Gc                                                                                                                                >  5:230829/1‑149 (MQ=255)                               gAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGTGGGGTCGTAAATGGTGTGAAAGGGTCGGGGTGGGTTATGTGGAACAGGAAATTGGAGATAAAAACTGTGGGATCGGGCGTGCCCGCGCACTCCGGCGAA‑GCAGGTGccttca                                                                                                                     >  4:270801/1‑145 (MQ=255)                               gAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGTGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGTTATGTGGAACACGAAATTGCTGATAAAAACTGTGGGAGCGGGCGTGGCCGAGAGCACCGGCGAA‑GCCGGGGCGATag                                                                                                                     >  4:265987/1‑148 (MQ=255)                               gAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATa                                                                                                                      >  5:361004/1‑148 (MQ=255)                                                gTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCGTGCTTc                                                                                                    >  1:332290/1‑149 (MQ=255)                                                gTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTc                                                                                                    >  5:155916/1‑149 (MQ=255)                                                   gcagccaggcccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcaatcctgaaaccaattcgaaatctgtgggagcgggctTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTcgc                                                                                                  >  3:169271‑M1/97‑148 (MQ=255)                                                   aaTGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTcgcg                                                                                                 >  5:226775/1‑149 (MQ=255)                                                   aaTGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCAGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTcgcg                                                                                                 >  1:69658/1‑149 (MQ=255)                                                     tGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCggg                                                                                               >  8:194426/1‑149 (MQ=255)                                                         aggcccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcaatcctgaaaccaattcgaaatctgtgggagcgggctTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCgg                                                                                                <  6:362197‑M1/54‑1 (MQ=255)                                                         aggcccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcaatcctgaaaccaattcgaaatctgtgggagcgggctTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCgg                                                                                                >  5:362197‑M1/91‑144 (MQ=255)                                                                 ggAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTcc                                                                                   >  4:350407/1‑149 (MQ=255)                                                                       gTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCTGCTCCca                                                                                 >  3:291296/1‑145 (MQ=255)                                                                           taatcggTGTTAACGGGTTGGGGAGGGATTTGTGGAACACGAAATTGCAGATAAAAACTGTGTGAGGGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCGCGCTCCCACAGATTTc                                                                         <  5:198711/144‑1 (MQ=25)                                                                           tAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTc                                                                         >  6:322644/1‑149 (MQ=255)                                                                              aTGGGGGGAACGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGaa                                                                      <  4:204696/149‑1 (MQ=255)                                                                               tGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAAt                                                                     <  6:361004/149‑1 (MQ=255)                                                                                ggTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCACGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAAtt                                                                    >  1:156039/1‑149 (MQ=255)                                                                                      tacgggTCGGGGAGCGATATGTGGAACACTAAATTGAAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGttt                                                               <  4:168621/145‑1 (MQ=255)                                                                                            tgaacacgatgtctgttcaatcctgaaaccaattcgaaatctgtgggagcgggctTGc                                                                                                                                                    >  6:64650‑M1/56‑58 (MQ=255)                                                                                            tgaacacgatgtctgttcaatcctgaaaccaattcgaaatctgtgggagcgggctTGc                                                                                                                                                    <  5:64650‑M1/3‑1 (MQ=255)                                                                                               gggagggaTATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCTGCTCCCACAGATTTCGAATTGGTTTCAGGATTGaa                                                     <  4:291296/149‑1 (MQ=255)                                                                                               gggagggaTAGGGTGAACACGAAATTGCAGATAAAAAGTGGGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGTTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGaa                                                     <  3:265987/149‑1 (MQ=25)                                                                                               ggccggcatatGTGGAACACGAAATTGCAGATAAAAAGTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGaa                                                     <  3:270801/142‑1 (MQ=255)                                                                                                ggagggaTATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATAAACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGaa                                                     >  2:32078/1‑148 (MQ=255)                                                                                                    ggaTATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGAc                                                <  6:230829/149‑1 (MQ=255)                                                                                                      atatGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCt                                                                                     <  6:175288/110‑1 (MQ=255)                                                                                                      atatGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCt                                                                                     >  5:175288/1‑110 (MQ=255)                                                                                                          gtgGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCa                                                             <  3:118589/130‑1 (MQ=255)                                                                                                          gtgGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCa                                                             >  4:118589/1‑130 (MQ=255)                                                                                                               acacGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAg                                     <  3:350407/149‑1 (MQ=255)                                                                                                                   gAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCtt                                 >  6:317141/1‑149 (MQ=255)                                                                                                                    aaaTTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCCGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTtg                                <  3:237840/149‑1 (MQ=255)                                                                                                                     aaTTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTtgg                               >  3:158352/1‑149 (MQ=255)                                                                                                                           aGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCa                                                             <  7:251803/113‑1 (MQ=255)                                                                                                                           aGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCa                                                             >  8:251803/1‑113 (MQ=255)                                                                                                                              tAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAgg                       >  1:68750/1‑149 (MQ=255)                                                                                                                               aaaaaCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTc                                                                         <  6:180176/97‑1 (MQ=255)                                                                                                                               aaaaaCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTc                                                                         >  5:180176/1‑97 (MQ=255)                                                                                                                                aaaaCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCGTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGcc                    <  2:332290/149‑1 (MQ=255)                                                                                                                                        gggAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCctgctg              >  5:4203/1‑147 (MQ=255)                                                                                                                                           aGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGt         >  5:300211/1‑149 (MQ=255)                                                                                                                                             cGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTgg       <  4:158352/149‑1 (MQ=255)                                                                                                                                                  gTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCTg  <  2:68750/149‑1 (MQ=255)                                                                                                                                                  gTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCTg  >  4:311936/1‑149 (MQ=255)                                                                                                                                                  gTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCTg  >  8:278899/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     TCATATTTATGCGGATAAATAGGATTTAGCGAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAA‑GCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTGGGCCTG  >  NC_002947/726765‑727058

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.