New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1101660	67 (1.180)	4 (0.070)	3/250	NT	5.5%	coding (241/486 nt)	mlaD	phospholipid ABC transporter substrate‑binding protein
	?	NC_002947	= 1101724	72 (1.320)					coding (305/486 nt)	mlaD	phospholipid ABC transporter substrate‑binding protein

GGCTGTCGGCCAGCCCGAGCAGCGATACCTATAAAGTTTATGCTTACTTCGACAATATCGCCGGTTTGACGGTCAGAGCTAAAGTGACCATGGCCGGTGTGACCATCGGCAAGGTTACCGCCATCGATCTGGACCGTGATTCCTACACCGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1101508‑1101660 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtcAGGATCGAGGCAGTGGAGTCGGTCGGCAGGTTATCGACCGACTTGTCCAGCTGCAACGTCACCCGACCGGTGTAG  <  NC_002947/1101724‑1101650                                                                                                                                                                                                                                      GGCTGTCGGCCAGCCCGAGCAGCGATACCTATAAAGTTTATGCTTACTTCGACAATATCGCCGGTTTGACGGTCAGAGCTAAAGTGACCATGGCCGGTGTGACCATCGGCAAGGTTACCGCCATCGATCTGGACCGTGATTCCTACACC                                                                                 >  4:214374/1‑149  GCTGTCGGCCAGCCCGAGCAGCGATACCTATAAAGTTTATGCTTACTTCGACAATATCGCCGGTTTGACGGTCAGAGCTAAAGTGACCATGGCCGGTGTGACCATCGGCAAGGTTACCGCCATCGATCTGGACCGTGATTCCTACACCG                                                                                <  1:220572/149‑1    TGTCGGCCACACCGAGCAGCGATACCTATAAAGTTTATGCTTACTACGACAATATCGCCGGTTTGACGGTCAGACCTAAAGTGACCATGGCCGGTGTGACCATCCGCAAGGTTACCTCCATCGATCTGGACCGAGATTCCTACACCGGT                                                                              >  6:140549/1‑149                                                                             AGCTAAAGTGACCATGGCCGGTGTGACCATCGGCAAGGTTACCGCCATCGATCTGGACCGTGATTCCTACACCGGTCAGGATCGAGGCAGTGGAGTCGGTCGGCAGGTTATCGACCGACTTGTCCAGCTGCAACGTCACCCGACCGGTG     <  3:105615/149‑1                                                                             AGCTAAAGTGACCATGGCCGGTGTGACCATCGGCAAGGTTACCGCCATCGATCTGGACCGTGATTCCTACACCGGTCAGGATCGAGGCAGTGGAGTCGGTCGGCAGGTTATCGACCGACTTGTCCAGCTGCAACGTCACCCGACCGGTG     <  3:72879/149‑1                                                                                  AAGTGACCATGGCCGGTGTGACCATCGGCAAGGTTACCGCCATCGATCTGGACCGTGATTCCTACACCGGTCAGGATCGAGGCAGTGGAGTCGGTCGGCAGGTTATCGACCGACTTGTCCAGCTGCAACGTCACCCGACCGGTGTAG  >  3:82671/1‑147                                                                                  AAGTGACCATGGCCGGTGTGACCATCGGCAAGGTTACCGCCATCGATCTGGACCGTGATTCCTACACCGGTCAGGATCGAGGCAGTGGAGTCGGTCGGCAGGTTATCGACCGACTTGTCCAGCTGCAACGTCACCCGACCGGTGTAG  <  4:82671/147‑1                                                                                                                                                                                                                                      GGCTGTCGGCCAGCCCGAGCAGCGATACCTATAAAGTTTATGCTTACTTCGACAATATCGCCGGTTTGACGGTCAGAGCTAAAGTGACCATGGCCGGTGTGACCATCGGCAAGGTTACCGCCATCGATCTGGACCGTGATTCCTACACCGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1101508‑1101660 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtcAGGATCGAGGCAGTGGAGTCGGTCGGCAGGTTATCGACCGACTTGTCCAGCTGCAACGTCACCCGACCGGTGTAG  <  NC_002947/1101724‑1101650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.