| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1362407 | 58 (1.020) | 4 (0.080) | 4/244 | NT | 6.8% | coding (797/1347 nt) | phoQ | sensor protein |
| ? | NC_002947 | = 1362436 | 55 (1.030) | coding (826/1347 nt) | phoQ | sensor protein | |||||
CCACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1362253‑1362407‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcagcaCCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCACGGTAGCGCGTGCGCTGCTCACGCTCACTGCGCAA < NC_002947/1362436‑1362295 CCACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTT > 8:71483/1‑149CCACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTT > 8:134486/1‑149CCACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTT > 7:106707/1‑149 CACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTG < 8:106707/149‑1 ACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTG > 8:209326/1‑148 CGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCA < 5:238331/149‑1 GAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCA > 8:68357/1‑149 GAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCA < 4:307857/149‑1 GCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGCCCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGC > 5:230330/1‑135 GCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGC < 6:230330/135‑1 AACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCA > 2:84876/1‑122 AACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCA < 1:84876/122‑1 CGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCT > 6:284508/1‑149 CGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAG < 5:284508/148‑1 CTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAA > 6:186242/1‑99 CTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAA < 5:186242/99‑1 CTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTG < 4:209941/57‑1 CTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTG > 3:209941/1‑57 TTGCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGT > 7:139678/1‑104 TTGCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGT < 8:139678/104‑1 TGCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCACGGTAGCGCGTGCGCTGCTCACGCTCACTGCGC < 7:231787/147‑1 CAGCACTCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCAC > 4:240752/1‑113 CAGCACTCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCAC < 3:240752/113‑1 AGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCACGGTAGCGCGTGCGCTGCTCACGCTCACTGCGCAA > 5:147105/1‑146 CCACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1362253‑1362407‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcagcaCCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCACGGTAGCGCGTGCGCTGCTCACGCTCACTGCGCAA < NC_002947/1362436‑1362295 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |