New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1362407	58 (1.020)	4 (0.080)	4/244	NT	6.8%	coding (797/1347 nt)	phoQ	sensor protein
	?	NC_002947	= 1362436	55 (1.030)					coding (826/1347 nt)	phoQ	sensor protein

GAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGCTCGACAGC  >  NC_002947/1362259‑1362555                                                                                                                                                       |                                                                                                                                                     gAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCA                                                                                                                                                      <  4:307857‑M1/149‑1 (MQ=255) gAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCA                                                                                                                                                      >  8:68357‑M1/1‑149 (MQ=255)    ttGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCagcagc                                                                                                                                                    <  7:68357/148‑1 (MQ=255)           gcCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAgcggc                                                                                                                                            <  8:284149/149‑1 (MQ=255)             cTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGgcga                                                                                                                                          <  2:91406/149‑1 (MQ=255)               tACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAgcagcgcag                                                                                                                                                >  5:352913/1‑141 (MQ=255)               tACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAgcagcgcag                                                                                                                                                <  6:352913/141‑1 (MQ=255)                        gctcAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCGTATGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCa                                                                                                                                 <  1:103523/148‑1 (MQ=255)                          tcAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGgcg                                                                                                                             >  7:226792/1‑149 (MQ=255)                            aaCCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCA                                                                                                                                                      >  2:84876‑M1/1‑122 (MQ=255)                            aaCCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCA                                                                                                                                                      <  1:84876‑M1/122‑1 (MQ=255)                             aCCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCgg                                                                                                                          <  5:301193/149‑1 (MQ=255)                             aCCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCgg                                                                                                                          <  3:218510/149‑1 (MQ=255)                               cGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAcccgcgcctgctcgcgctcgccgctgcgct                                                                                                                        >  6:284508‑M1/1‑119 (MQ=255)                                     ttGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGtgct                                                                                                                     >  5:147105‑M2/1‑142 (MQ=255)                                       gcgcAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGtgctgca                                                                                                                  <  7:231787‑M2/147‑8 (MQ=255)                                        cgcAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAcccgcgcctgctcgcgctcgccgctgcgctgctgcaag                                                                                                                <  5:284508‑M1/148‑39 (MQ=255)                                        cgcAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCaaa                                                                                                                <  7:134486/148‑1 (MQ=255)                                          cAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGcc                                                                                                             <  7:71483/149‑1 (MQ=255)                                           aGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGc                                                                                                              >  2:115256/1‑147 (MQ=255)                                             tgagcgtgagcAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCTCAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAACAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGa                                                                                                          <  5:292699/149‑1 (MQ=255)                                             tgagcgtgagcAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGa                                                                                                          <  7:100114/149‑1 (MQ=255)                                             tgagcgtgagcAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGa                                                                                                          <  8:256524/149‑1 (MQ=255)                                               agcgtgagcAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATc                                                                                                        <  4:58495/149‑1 (MQ=255)                                                 cgtgagcAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATc                                                                                                        >  5:301529/1‑147 (MQ=255)                                                 cgtgagcAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTCCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGa                                                                                                      <  1:115256/149‑1 (MQ=255)                                                   tgagcAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAgc                                                                                                    >  2:137225/1‑149 (MQ=255)                                                             aCGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGc                                                                                            >  6:179278/1‑147 (MQ=255)                                                              cgcgCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCcag                                                                                         <  7:209326/149‑1 (MQ=255)                                                               gcgcTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACAGCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCcag                                                                                         >  1:256199/1‑149 (MQ=255)                                                               gcgcTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCcag                                                                                         >  7:220242/1‑148 (MQ=255)                                                               gcgcTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCcag                                                                                         >  5:54923/1‑148 (MQ=255)                                                                     ccGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGgcgagcgcga                                                                                                                                    >  2:72002/1‑99 (MQ=255)                                                                       gTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGAGtgctg                                                                                                                    >  4:240752‑M2/1‑108 (MQ=255)                                                                       gTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGAGtgctg                                                                                                                    <  3:240752‑M2/113‑6 (MQ=255)                                                                       gTGATTCGCTGGAATACCTGGCGCACAGCCTCAAGAC‑TCCG‑CTGGCGGTGCTGCAGGGCTGTGGTGAAAGCTAGCAGCAGCGCAGCGGCGAGAGCTAGCAGGCGCGGGAGCTGCaa                                                                                                                 >  8:233293/1‑116 (MQ=255)                                                                            tCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGa                                                                                              <  5:175078/130‑1 (MQ=255)                                                                            tCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGa                                                                                              >  6:175078/1‑130 (MQ=255)                                                                             cGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAg                                                                          >  5:222490/1‑149 (MQ=255)                                                                              gCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGc                                                                         >  8:90229/1‑149 (MQ=255)                                                                                 ggACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGcc                                                                                           >  4:38908/1‑128 (MQ=255)                                                                                 ggACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGcc                                                                                           <  3:38908/128‑1 (MQ=255)                                                                                   acgacCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGtgctgcaa                                                                                                                 >  7:139678‑M2/1‑96 (MQ=255)                                                                                   acgacCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGtgctgcaa                                                                                                                 <  8:139678‑M2/104‑9 (MQ=255)                                                                                        cTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAcccgcgcctgctcgcgctcgccgctgcgctgctgcaa                                                                                                                 <  5:186242‑M1/99‑38 (MQ=255)                                                                                        cTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAcccgcgcctgctcgcgctcgccgctgcgctgctgcaa                                                                                                                 >  6:186242‑M1/1‑62 (MQ=255)                                                                                             gcACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCcag                                                                                         >  6:39669/1‑118 (MQ=255)                                                                                             gcACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCcag                                                                                         >  6:354905/1‑118 (MQ=255)                                                                                             gcACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGAc                                                                                >  4:170879/1‑127 (MQ=255)                                                                                             gcACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGAc                                                                                <  3:170879/127‑1 (MQ=255)                                                                                             gcACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGcc                                                          <  5:237811/149‑1 (MQ=255)                                                                                              cacaGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGTCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCt                                                         >  6:328412/1‑149 (MQ=255)                                                                                              cacaGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCt                                                         <  8:241906/149‑1 (MQ=255)                                                                                                   ccTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTgcgc                                                     >  8:293984/1‑148 (MQ=255)                                                                                                       aaGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAagag                                                <  4:74816/149‑1 (MQ=255)                                                                                                           c‑gccg‑cTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCACATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGc                                            <  8:231787/149‑1 (MQ=255)                                                                                                               cg‑cTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTg                                         <  8:220242/149‑1 (MQ=255)                                                                                                                       ggTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGc                                   >  6:96597/1‑148 (MQ=255)                                                                                                                          gctgcAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCcaca                               <  6:301529/149‑1 (MQ=255)                                                                                                                            tgcAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCcagc                                                                                        >  6:217959/1‑90 (MQ=255)                                                                                                                            tgcAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCcagc                                                                                        <  5:217959/90‑1 (MQ=255)                                                                                                                            tgcAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGc                             >  3:219178/1‑149 (MQ=255)                                                                                                                            tgcAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGc                             >  7:39779/1‑149 (MQ=255)                                                                                                                              cAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCg                            >  4:237715/1‑148 (MQ=255)                                                                                                                               aGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTa                          >  4:258864/1‑149 (MQ=255)                                                                                                                               aGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTa                          >  2:180834/1‑149 (MQ=255)                                                                                                                                     tGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATtgctg                    >  6:280357/1‑149 (MQ=255)                                                                                                                                       ggTGAAAGCTTGCAGGAGCGCAGCGGCGAGGGCTAGCAGGCGCGGGTGCTGCAAAGCCAGATAGAGCGCATGAGCCATGAGATCGACTACCAGCTGTAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTAGGCAACAGCGTATtgctta                   <  6:222490/148‑3 (MQ=255)                                                                                                                                              gCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTg           <  2:256199/149‑1 (MQ=255)                                                                                                                                               cTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGtgctgcaagctttcacccacgccctgcagcaccgccagcggcgtcttcaggctgtgcgccaggtcgtccagcgaatcacggtagcgcgtgcgctgctcacgctcactgcg           <  5:284508‑M2/148‑111 (MQ=255)                                                                                                                                                ttGCAGCAcccgcgcctgctcgcgctcgccgctgcgctgctgcaagctttcacccacgccctgcagcaccgccagcggcgtcttcaggctgtgcgccaggtcgt                                                      >  7:139678‑M1/1‑8 (MQ=255)                                                                                                                                                ttGCAGCAcccgcgcctgctcgcgctcgccgctgcgctgctgcaagctttcacccacgccctgcagcaccgccagcggcgtcttcaggctgtgcgccaggtcgt                                                      <  8:139678‑M1/104‑97 (MQ=255)                                                                                                                                                ttGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGtgctgcaagctttcacccacgccctgcagcaccgccagcggcgtcttcaggctgtgcgccag                                                           >  6:186242‑M2/1‑37 (MQ=255)                                                                                                                                                ttGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGtgctgcaagctttcacccacgccctgcagcaccgccagcggcgtcttcaggctgtgcgccag                                                           <  5:186242‑M2/99‑63 (MQ=255)                                                                                                                                                 tGCAGCAcccgcgcctgctcgcgctcgccgctgcgctgctgcaagctttcacccacgccctgcagcaccgccagcggcgtcttcaggctgtgcgccaggtcgtccagcgaatcacggtagcgcgtgcgctgctcacgctcactgcgc          <  7:231787‑M1/147‑141 (MQ=255)                                                                                                                                                 tGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGCt         >  1:267387/1‑148 (MQ=255)                                                                                                                                                 tGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGCt         <  2:267387/148‑1 (MQ=255)                                                                                                                                                  gcagcaGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGTCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGCTc        <  5:328412/148‑1 (MQ=255)                                                                                                                                                  gcagcaGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGCt         <  5:96597/147‑1 (MQ=255)                                                                                                                                                   cagcagCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGCTCGa      <  1:137225/149‑1 (MQ=255)                                                                                                                                                   cagcactcgcgcctgctcgcgctcgccgctgcgctgctgcaagctttcacccacgccctgcagcaccgccagcggcgtcttcaggctgtgcgccaggtcgtccagcgaatcac                                          <  3:240752‑M1/113‑109 (MQ=255)                                                                                                                                                   cagcactcgcgcctgctcgcgctcgccgctgcgctgctgcaagctttcacccacgccctgcagcaccgccagcggcgtcttcaggctgtgcgccaggtcgtccagcgaatcac                                          >  4:240752‑M1/1‑5 (MQ=255)                                                                                                                                                    agcacccgcgcctgctcgcgctcgccgctgcgctgctgcaagctttcacccacgccctgcagcaccgccagcggcgtcttcaggctgtgcgccaggtcgtccagcgaatcacggtagcgcgtgcgctgctcacgctcactgcgcaa        >  5:147105‑M1/1‑4 (MQ=255)                                                                                                                                                     gcagcgcagcGGCGTGGGCGAGCAGGCGCGGTTGCTGCAAAGCCAGATCGTGCGCATGAGCCAGAAGATCGACTACCAGCTGCAACGCGCCAGCCTCCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGCTCGACa    <  1:93960/149‑1 (MQ=255)                                                                                                                                                      cagcgcagcgGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGCTCGACAg   >  4:96249/1‑149 (MQ=255)                                                                                                                                                      cagcgcagcgGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCAGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGCTCGACAg   >  8:153752/1‑149 (MQ=255)                                                                                                                                                       agcgcagcgGCGAGCGCGAGCAGGCGCGGGtgctgcaagctttcacccacgccctgcagcaccgccagcggcgtcttcaggctgtgcgccaggtcgtccagcgaatcacggtagcgcgtgcgctgctcacgctcactgcgcaacagacg  >  6:284508‑M2/1‑30 (MQ=255)                                                                                                                                                       |                                                                                                                                                     GAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGAC‑GCCG‑CTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCAGCGCAGCGGCGAGCGCGAGCAGGCGCGGGTGCTGCAAAGCCAGATCGAGCGCATGAGCCAGCAGATCGACTACCAGCTGCAACGCGCCAGCCTGCGCAAGAGTGGCCTGGTACGCCACAGCGTATTGCTGCGGCCGTTGCTCGACAGC  >  NC_002947/1362259‑1362555

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.