| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1717760 | 39 (0.690) | 3 (0.060) | 3/240 | NT | 6.8% | coding (459/777 nt) | rsmJ | ribosomal RNA small subunit methyltransferase J |
| ? | NC_002947 | = 1717783 | 46 (0.880) | coding (482/777 nt) | rsmJ | ribosomal RNA small subunit methyltransferase J | |||||
CACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1717604‑1717760‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcatgcgcTCGATGGCGTTGCCGGTCAGCAGGCGCATGCGCCCGACAATCGGGCCCACTTCTTCATCCGCTCGCGCCCGCGCCAGGCCGTCCTCCAGCAGCGCGGCAATCAGCGGCTGGCGCTCGATCAGGGTCATCTGGCAGCCAAGGCTG < NC_002947/1717783‑1717640 CACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGTGGATGAAGAAGTGGGCCCGATTGTCGGGC < 1:118681/149‑1CACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGC < 2:133378/149‑1 GGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGC < 2:162400/149‑1 CCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCTCGATGGCGTTGCCGGTCAGCAGGCGCATGC < 2:108175/149‑1 CCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCTCGATGGCGTTGCCGGTCAGCAGGCGCATGCGC < 5:37635/133‑1 CCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCTCGATGGCGTTGCCGGTCAGCAGGCGCATGCGC > 6:37635/1‑133 TGCGCTCGATGGCGTTGCCGGTCAGCAGGCGCATGCGCCCGACAATCGGGCCCACTTCTTCATCCGCTCGCGCCCGCGCCAGGCCGTCCTCCAGCAGCGCGGCAATCAGCGGCTGGCGCTCGATCAGGGTCATCTGGCAGCCAAGGCTG < 2:85937/149‑1 CACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1717604‑1717760‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcatgcgcTCGATGGCGTTGCCGGTCAGCAGGCGCATGCGCCCGACAATCGGGCCCACTTCTTCATCCGCTCGCGCCCGCGCCAGGCCGTCCTCCAGCAGCGCGGCAATCAGCGGCTGGCGCTCGATCAGGGTCATCTGGCAGCCAAGGCTG < NC_002947/1717783‑1717640 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |