New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1717760	39 (0.690)	3 (0.060)	3/240	NT	6.8%	coding (459/777 nt)	rsmJ	ribosomal RNA small subunit methyltransferase J
	?	NC_002947	= 1717783	46 (0.880)					coding (482/777 nt)	rsmJ	ribosomal RNA small subunit methyltransferase J

CAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATGCGCGTGTTCCGGCCTTTGGTGGGCGATGACCTGGATGCCCCGGCGC  >  NC_002947/1717640‑1717926                                                                                                                                                 |                                                                                                                                                 cAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAgcgca                                                                                                                                             <  2:85937‑M2/149‑6 (MQ=255)          cTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCt                                                                                                                                    <  4:241866/149‑1 (MQ=255)          cTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCt                                                                                                                                    <  6:185168/149‑1 (MQ=255)          cTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCt                                                                                                                                    <  7:254562/149‑1 (MQ=255)           tGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTg                                                                                                                                   >  8:119946/1‑149 (MQ=255)                gATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAg                                                                                                                              <  5:221559/149‑1 (MQ=255)                  tGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAggg                                                                                                                            <  5:164409/149‑1 (MQ=255)                              aGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAg                                                                                                                >  8:112728/1‑149 (MQ=255)                                cgcCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGt                                                                                                              <  1:234641/149‑1 (MQ=255)                                  ccAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGa                                                                                                            <  7:119946/149‑1 (MQ=255)                                     gCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGgcgc                                                                                                                     >  6:370149/1‑137 (MQ=255)                                     gCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGgcgc                                                                                                                     <  5:370149/137‑1 (MQ=255)                                     gCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCt                                                                                                         <  8:145649/149‑1 (MQ=255)                                       cGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTAc                                                                                                       >  4:147822/1‑149 (MQ=255)                                          tGATTGCCGCGCTGCTGGAGGACGGCCTGGCGCGGGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTAc                                                                                                       >  1:47926/1‑147 (MQ=255)                                          tGATTGCCGCGCTGCTGGAGGACGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTAc                                                                                                       <  2:47926/146‑1 (MQ=255)                                             ttGCCGCGCTGCTGGAGGACGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGAc                                                                                                 <  5:175652/149‑1 (MQ=255)                                                ccGCGCTGCTGGAGGACGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGAccc                                                                                               >  2:98093/1‑148 (MQ=255)                                                  gcgcTGCTGGAGGACGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGAt                                                                                            >  1:25589/1‑149 (MQ=255)                                                        ctgGAGGACGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTc                                                                                      <  7:112728/148‑1 (MQ=255)                                                            aggaCGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCacac                                                                                 >  5:143700/1‑149 (MQ=255)                                                               aCGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACcgc                                                                              <  1:85937/149‑1 (MQ=255)                                                                   ccTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGAc                                                                           >  2:73306/1‑148 (MQ=255)                                                                    cTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACaa                                                                         <  1:16665/149‑1 (MQ=255)                                                                       gcgc‑gggcgctCGAGGATGAATATGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAaga                                                                       <  6:251445/148‑1 (MQ=255)                                                                                 cgAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGt                                                             <  6:143700/149‑1 (MQ=255)                                                                                       gATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGaaaaa                                                       <  8:158310/149‑1 (MQ=255)                                                                                           aagaagTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTc                                                                                      >  1:161305/1‑114 (MQ=255)                                                                                           aagaagTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTc                                                                                      <  2:161305/114‑1 (MQ=255)                                                                                           aagaagTGGGCCCGATTGTCGGGCGCAGGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGa                                                    <  5:294817/148‑1 (MQ=255)                                                                                              gcatgcgCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATg                                                >  2:94059/7‑149 (MQ=255)                                                                                                 tGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATgcgc                                             <  2:25589/149‑1 (MQ=255)                                                                                                   ggCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATGcgcg                                            <  3:147822/148‑1 (MQ=255)                                                                                                               gggCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATGCGCGTGTTc                                       <  8:311429/141‑1 (MQ=255)                                                                                                               gggCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATGCGCGTGTTc                                       >  7:311429/1‑141 (MQ=255)                                                                                                                ggCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATGTTTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATGCGCGTGTTCCGGCCttt                               <  1:98093/149‑1 (MQ=255)                                                                                                                 gcgcATGCGCCTGCTGACCGGCAACGCCATCGAgcgcatgcgcccgacaatcgggcccacttcttcatccgctcgcgcccgcgccaggccgtcctccagcagcgcggcaatcagcggctggcgctcgatcagg                                              <  5:37635‑M2/133‑101 (MQ=255)                                                                                                                 gcgcATGCGCCTGCTGACCGGCAACGCCATCGAgcgcatgcgcccgacaatcgggcccacttcttcatccgctcgcgcccgcgccaggccgtcctccagcagcgcggcaatcagcggctggcgctcgatcagg                                              >  6:37635‑M2/1‑33 (MQ=255)                                                                                                                  cgcATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATGCGCGTGTTCCGGCCTTtggt                            <  1:94059/149‑1 (MQ=255)                                                                                                                   gcATGCGCCTGCTGACCGGCAACGCCATCGAgcgcatgcgcccgacaatcgggcccacttcttcatccgctcgcgcccgcgccaggccgtcctccagcagcgcggcaatcagcggctggcgctcgatcagggtcatctggcagccaagg                            <  2:108175‑M2/149‑119 (MQ=255)                                                                                                                              ctgACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATGCGCGTGTTCCGGCCTTTGGTGGGCGATGAc                  <  1:73306/147‑1 (MQ=255)                                                                                                                                 aCCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGa                                                    <  8:120341/110‑1 (MQ=255)                                                                                                                                 aCCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGa                                                    >  7:120341/1‑110 (MQ=255)                                                                                                                                 aCCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATGCGCGTGTTCCg                                     >  3:272146/1‑125 (MQ=255)                                                                                                                                 aCCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATGCGCGTGTTCCGGCCTTtggtg                           >  1:327230/1‑135 (MQ=255)                                                                                                                                 aCCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATGCGCGTGTTCCGGCCTTtggtg                           <  2:327230/135‑1 (MQ=255)                                                                                                                                 aCCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATGCGCGTGTTCCGGCCTTTGGTGGGCGATGACCt                >  6:3416/1‑146 (MQ=255)                                                                                                                                 aCCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATGCGCGTGTTCCGGCCTTTGGTGGGCGATGACCt                <  5:3416/146‑1 (MQ=255)                                                                                                                                 aCCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATGCGCGTGTTCCGGCCTTTGGTGGGCGATGACCTGGa             >  1:304344/1‑149 (MQ=255)                                                                                                                                     gCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATGCGCGTGTTCCGGCCTTTGGTGGGCGATGACCTGGATGcc         >  6:29948/1‑149 (MQ=255)                                                                                                                                      cAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATGCGCGTGTTCCGGCCTTTGGTGGGCGATGACCTGGATGccc        >  2:137840/1‑149 (MQ=255)                                                                                                                                          gCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATGCGCGTGTTCCGGc                                   <  3:247603/118‑1 (MQ=255)                                                                                                                                          gCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATGCGCGTGTTCCGGc                                   >  4:247603/1‑118 (MQ=255)                                                                                                                                            cATCGAGCGCATGCGCGCCTGGGAATGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATGCGCGTGTTCCGGCCTTTGGTGGGCGATGACCTGGATGCCCCGgcgc  <  5:29948/149‑1 (MQ=255)                                                                                                                                                gAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATGCGCGTGTTCCGGCCTTTGGTGGGCGATGACCt                >  1:287522/1‑131 (MQ=255)                                                                                                                                                gAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATGCGCGTGTTCCGGCCTTTGGTGGGCGATGACCt                <  2:287522/131‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                 CAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGCCGCTGATTGCCGCGCTGCTGGAGGACGGCCTGGCGC‑GGGCGCGAGCGGATGAAGAAGTGGGCCCGATTGTCGGGCGCATGCGCCTGCTGACCGGCAACGCCATCGAGCGCATGCGCGCCTGGGAAGGGGAGGCGCCGCAGGTGATCTACCTCGACCCGATG‑TTTCCACACCGCGACAAGAGCGCCCTGGTGAAAAAGGAAATGCGCGTGTTCCGGCCTTTGGTGGGCGATGACCTGGATGCCCCGGCGC  >  NC_002947/1717640‑1717926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.