| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1738703 = | 58 (1.020) | 4 (0.070) | 4/248 | NT | 6.8% | coding (490/1107 nt) | PP_1532 | putative Phage integrase |
| ? | NC_002947 | 1738757 = | 55 (1.020) | coding (436/1107 nt) | PP_1532 | putative Phage integrase | |||||
GGGTCGAGAAAGCATTCGGAGAGCGCGGTATCCGCACGCTGACGACCATGGACATCGCGGATTACCTATCGACCTACGTCAAAGAGGGTAAGGCCCAGATGGCCAGGGCTATGCGCTCCTTACTGCGCGACCTTTTCATGGGGGCCATGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1738855‑1738703‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccaTCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTCGCATACGAAGGTTGCGCATGCTCGATTCTGAAAGCTCA > NC_002947/1738757‑1738902 GGGTCGAGAAAGCATTCGGAGAGCGCGGTATCCGCACGCTGACGACCATGGACATCGCGGATTACCTATCGACCTACGTCAAAGAGGGTAAGGCCCAGATGGCCAGGGCTATGCGCTCCTTACTGCGCGACCTTTTCATGGGGGCCATG < 1:69524/149‑1GGGTCGAGAAAGCATTCGGAGAGCGCGGTATCCGCACGCTGACGACCATGGACATCGCGGATTACCTATCGACCTACGTCAAAGAGGGTAAGGCCCAGATGGCCAGGGCTATGCGCTCCTTACTGCGCGACCTTTTCATGGGGGCCATG < 1:77942/149‑1GGGTCGAGAAAGCATTCGGAGAGCGCGGTATCCGCACGCTGACGACCATGGACATCGCGGATTACCTATCGACCTACGTCAAAGAGGGTAAGGCCCAGATGGCCAGGGCTATGCGCTCCTTACTGCGCGACCTTTTCATGGGGGCCATG > 6:96686/1‑149 CAGATGGCCAGGGCTATGCGCTCCTTACTGCGCGACCTTTTCATGGGGGCCATGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTT > 1:76299/1‑149 AGATGGCCAGGGCTATGCGCTCCTTACTGCGCGACCTTTTCATGGGGGCCATGGCCATCTGGGCCTTACCGTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGATTTC > 5:45435/1‑149 TGCGCTCCTTACTGCGCGACCTTTTCATGGGGGCCATGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCA < 2:76299/147‑1 cgaTCCTTTCTGAGCGACCTTTTCATGGGGGCCATGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTC < 6:45435/145‑1 TGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTCGCATACGAAGGTTGCGCATGCTCGATTCTGAAAGC > 3:342697/1‑149 GCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTCGCATACGAAGGTTGCGCATGCTCGATTCTGAAAGCTC < 7:179111/149‑1 CCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTCGCATACGAAGGTTGCGCATGCTCGATTCTGAAAGCTCA < 3:6902/149‑1 CCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTCGCATACGAAGGTTGCGCATGCTCGATTCTGAAAGCTCA < 7:67203/149‑1 GGGTCGAGAAAGCATTCGGAGAGCGCGGTATCCGCACGCTGACGACCATGGACATCGCGGATTACCTATCGACCTACGTCAAAGAGGGTAAGGCCCAGATGGCCAGGGCTATGCGCTCCTTACTGCGCGACCTTTTCATGGGGGCCATGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1738855‑1738703‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccaTCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTCGCATACGAAGGTTGCGCATGCTCGATTCTGAAAGCTCA > NC_002947/1738757‑1738902 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |