New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1738703 =	58 (1.020)	4 (0.070)	4/248	NT	6.8%	coding (490/1107 nt)	PP_1532	putative Phage integrase
	?	NC_002947	1738757 =	55 (1.020)					coding (436/1107 nt)	PP_1532	putative Phage integrase

CGCTTTCCACAACTCTAGCGTCAGGCGCTGGCGCTTGATCTTAACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTCGCATACGAAGGTTGCGCATGCTCGATTCTGAAAGCTCA  >  NC_002947/1738611‑1738902                                                                                                                                                   |                                                                                                                                                  gaaatcattcggagagcgcggtatccgcacgctgacgaccatggacatcgcggattacctatcgacctacgtcaaagacggtaaggcccagaTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCt                                                                                                                                                 >  5:45435‑M1/93‑149 (MQ=255)  gCTTTCCACAACTCTAGCGTCAGGCGCTGGCGCTTGATCTTAACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTg                                                                                                                                                >  8:10017/1‑149 (MQ=255)  aaagcattcggagagcgcggtatccgcacgctgacgaccatggacatcgcggattacctatcgacctacgtcaaagagggtaaggcccagaTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTg                                                                                                                                                >  1:76299‑M1/92‑149 (MQ=255)        cacaACTCTAGCGTCAGGCGCTGGCGCTTGATCTTAACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCCTCGGGGCCt                                                                                                                                           >  4:282692/1‑148 (MQ=255)        cacaACTCTAGCGTCAGGCGCTGGCGCTTGATCTTAACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCt                                                                                                                                           >  1:209969/1‑148 (MQ=255)         acaACTCTAGCGTCAGGCGCTGGCGCTTGATCTTAACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCtt                                                                                                                                          >  2:268126/1‑148 (MQ=255)           aaCTCTAGCGTCAGGCGCTGGCGCTTGATCTTAACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTAcc                                                                                                                                       >  3:112912/1‑149 (MQ=255)                  gCGTCAGGCGCTGGCGCTTGATCTTAACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCttt                                                                                                                                 <  7:93494/148‑1 (MQ=255)                  gCGTCAGGCGCTGGCGCTTGATCTTAACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCtt                                                                                                                                  <  4:286614/147‑1 (MQ=255)                    gTCAGGCGCTGGCGCTTGATCTTAACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGAc                                                                                                                              <  3:78774/149‑1 (MQ=255)                     tCAGGCGCTGGCGCTTGATCTTAACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACg                                                                                                                             <  1:268126/149‑1 (MQ=255)                        ggcgctggcgctTGATCTTAACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAg                                                                                                                          <  4:171836/149‑1 (MQ=255)                               gcgctTGATCTTAACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGAt                                                                                                                    <  7:317173/148‑1 (MQ=255)                                cgctTGATCTTAACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAg                                                                                                                  <  5:357060/149‑1 (MQ=255)                                   ttGATCTTAACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACACTCGGTGACGTAGGTCGATAGGt                                                                                                                >  8:67203/1‑148 (MQ=255)                                            aCCAGTGCGGCTTTGGTAGCTTCGACTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGa                                                                                                       <  6:338608/148‑1 (MQ=255)                                                   cGGCTTTGGTAGCTTCGACTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATg                                                                                               <  3:125539/149‑1 (MQ=255)                                                    ggCTTTGGTAGCTTCGACTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGAAGTAGGTCGATAGGTAATCCGCCATGTCCATgg                                                                                              >  6:338339/1‑149 (MQ=255)                                                           gTAGCTTCGACTGGGTTGTAGTCGACCCAGCCCCTGGTCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATa                                                                                                                   <  7:233947/121‑1 (MQ=255)                                                           gTAGCTTCGACTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATa                                                                                                                   >  8:233947/1‑121 (MQ=255)                                                            tAGCTTCGACTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGc                                                                                      >  6:268908/1‑149 (MQ=255)                                                            tAGCTTCGACTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCACGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACACTCTTTGACGTAGGTCGATAGGTAATCCGAGCTGTCCATGGTCGTAAGc                                                                                      >  6:135518/1‑149 (MQ=255)                                                                   gACTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCgta                                                                               <  2:209969/149‑3 (MQ=255)                                                                     cTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATa                                                                             <  4:112912/149‑1 (MQ=255)                                                                        ggTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACcg                                                                          >  5:330914/1‑149 (MQ=255)                                                                               gTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTg                                                                                   >  6:331330/1‑133 (MQ=255)                                                                               gTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTg                                                                                   <  5:331330/133‑1 (MQ=255)                                                                                     ccAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGt                                                                                                                <  7:126717/98‑1 (MQ=255)                                                                                     ccAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGt                                                                                                                >  8:126717/1‑98 (MQ=255)                                                                                     ccAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACcgcg                                                                        >  6:107082/1‑138 (MQ=255)                                                                                     ccAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACcgcg                                                                        <  5:107082/138‑1 (MQ=255)                                                                                     ccAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATg                                                             >  5:290421/1‑149 (MQ=255)                                                                                       aGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGt                                                                                                                            >  1:118330/1‑84 (MQ=255)                                                                                       aGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGt                                                                                                                            <  2:118330/84‑1 (MQ=255)                                                                                        gCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCtt                                                          >  4:61104/1‑149 (MQ=255)                                                                                         ccccTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCttt                                                         >  2:35192/1‑149 (MQ=255)                                                                                         ccccTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGAGGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCtgt                                                         >  2:332780/1‑147 (MQ=255)                                                                                         cagatggccagggctatgcgctccttactgcgcgaccttttcatgggggccatggccaTCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCttt                                                         >  1:76299‑M2/59‑149 (MQ=255)                                                                                          agatggccagggctatgcgctccttactgcgcgaccttttcatgggggccatggccaTCTGGGCCTTACCGTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGATTtc                                                        >  5:45435‑M2/58‑149 (MQ=255)                                                                                           ccTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTtct                                                       <  3:61104/149‑1 (MQ=255)                                                                                                 CATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGAccc                                                 >  6:96686‑M1/1‑149 (MQ=255)                                                                                                 CATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGAccc                                                 <  1:77942‑M1/149‑1 (MQ=255)                                                                                                 CATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGAccc                                                 <  1:69524‑M1/149‑1 (MQ=255)                                                                                                     gCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGtt                                             >  4:138213/1‑149 (MQ=255)                                                                                                      cccccATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTc                                            <  3:138213/149‑1 (MQ=255)                                                                                                        cccATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAg                                          >  4:6902/1‑149 (MQ=255)                                                                                                         tgcgctccttactgcgcgaccttttcatgggggccatggccaTCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCa                                           <  2:76299‑M2/105‑1 (MQ=255)                                                                                                         ccATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGgt                                                                                             <  5:164173/97‑1 (MQ=255)                                                                                                         ccATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACACTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGgt                                                                                             >  6:164173/1‑97 (MQ=255)                                                                                                           cgatcctttctgagcgaccttttcatgggggccatggccaTCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTc                                        <  6:45435‑M2/108‑1 (MQ=255)                                                                                                            tGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTCGc                                      <  5:261020/149‑1 (MQ=255)                                                                                                              aaaaGGTCACGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTCGCa                                     <  5:135518/148‑1 (MQ=255)                                                                                                               aaaGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTCGCATa                                   >  8:215424/1‑149 (MQ=255)                                                                                                                 aGGTAGCGCAGTAAGGAGCGCATAGCCCTGCCCATCTGGGCCTTACACACTTTGACGTAGGTCGATAGGAAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTCGCATAc                                  >  7:16872/1‑148 (MQ=255)                                                                                                                    tCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTCGCATACGAAg                              >  3:245078/1‑149 (MQ=255)                                                                                                                         cAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTCGCATACGAAGGTTgc                         <  6:290421/149‑1 (MQ=255)                                                                                                                         cAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTCGCATACGAAGGTTgc                         <  2:69524/149‑1 (MQ=255)                                                                                                                         cAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTCGCATACGAAGGTTgc                         <  5:268908/149‑1 (MQ=255)                                                                                                                               ggAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTCGCATACGAAGGTTGCGCATGc                   >  8:179111/1‑149 (MQ=255)                                                                                                                                gAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTACGGATACcgcg                                                                        <  4:316666/95‑1 (MQ=255)                                                                                                                                gAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTACGGATACcgcg                                                                        >  3:316666/1‑95 (MQ=255)                                                                                                                                     cATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATa                                                                                                                   >  1:309256/1‑47 (MQ=255)                                                                                                                                     cATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATa                                                                                                                   <  2:309256/47‑1 (MQ=255)                                                                                                                                      aTAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTCGCATACGAAGGTTGCGCATGCTCGATTc            >  7:146892/1‑149 (MQ=255)                                                                                                                                      aTAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTGCAGTCGCATACGAAGGTTGCGCATGCTCGATTc            <  3:282692/149‑1 (MQ=255)                                                                                                                                          cccTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTcc                                                                  <  1:314544/91‑1 (MQ=255)                                                                                                                                          cccTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTcc                                                                  >  2:314544/1‑91 (MQ=255)                                                                                                                                             tggccaTCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTCGCATACGAAGGTTGCGCATGCTCGATTCTGAAAGc     >  3:342697‑M2/7‑149 (MQ=255)                                                                                                                                               gccaTCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTCGCATACGAAGGTTGCGCATGCTCGATTCTGAAAGCTc   <  7:179111‑M2/145‑1 (MQ=255)                                                                                                                                                ccaTCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTCGCATACGAAGGTTGCGCATGCTCGATTCTGAAAGCTCa  <  7:67203‑M2/146‑1 (MQ=255)                                                                                                                                                ccaTCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTCGCATACGAAGGTTGCGCATGCTCGATTCTGAAAGCTCa  <  3:6902‑M2/146‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                  CGCTTTCCACAACTCTAGCGTCAGGCGCTGGCGCTTGATCTTAACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGTAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCGCGCTCTCCGAATGCTTTCTCGACCCGGTTCAGTCGCATACGAAGGTTGCGCATGCTCGATTCTGAAAGCTCA  >  NC_002947/1738611‑1738902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.