New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1747697	64 (1.130)	5 (0.090)	5/248	NT	8.3%	intergenic (‑189/+342)	PP_5473/PP_5474	LuxR family transcriptional regulator/hypothetical protein
	?	NC_002947	= 1747758	50 (0.930)					intergenic (‑250/+281)	PP_5473/PP_5474	LuxR family transcriptional regulator/hypothetical protein

ATGCCGAAGCTTCTTGCGATTTCTTTGGTGGTAAGTCCTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1747546‑1747697 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcatCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCAGCCCACACCGAGATCAAAAATGGACACGATCACTATCGGCGCATGGATAGGCCACCTCGGCCGAGGCCTGGCGCCTCGC  <  NC_002947/1747758‑1747614                                                                                                                                                                                                                                                                                                           ATGCCGAAGCTTCTTGCGATTTCTTTGGTGGTAAGTCCTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGTCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTG                                                                                                                                                      >  4:74422/1‑149     CGAAGCTTCTTGCGATTTCTTTGGTGGTAAGTCATCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCAATTTTTGATCTCGGTGTGGGCTGCATC                                                                                                                                                  >  6:332583/1‑149                              GGTAAGTCCTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATCGGTCGTGACGTTCGCCCTCCCCTTG                                                                                                                         >  2:231170/1‑149                                      CTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCTATTTTTGATCTCGGTGTGGGCTGC                                                                                                                                                     <  8:148525/113‑1                                      CTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCGATTTTTGATCTCGGTGTGGGCTGC                                                                                                                                                     >  7:148525/1‑113                                          AGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGG                                                                                                               >  3:168985/1‑147                                                            TTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCCTGCGCCGATAGGGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCAC                                                                                           <  5:332583/149‑1                                                                  TTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAA                                                                                     <  1:231170/149‑1                                                                     GCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGC                                                                                  <  4:168985/149‑1                                                                                                                                                      CATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCAGCCCACACCGAGATCAAAAATGGACACGATCACTATCGGCGCATGGATAGGCCACCTCGGCCGAGGCCTGGCGCCTCGC  <  5:301180/148‑1                                                                                                                                                      CATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCAGCCCACACCGAGATCAAAAATGGACACGATCACTATCGGCGCATGGATAGGCCACCTCGGCCGA                 <  4:32943/133‑1                                                                                                                                                      CATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCAGCCCACACCGAGATCAAAAATGGACACGATCACTATCGGCGCATGGATAGGCCACCACGGCCGA                 >  3:32943/1‑133                                                                                                                                                                                                                                                                                                           ATGCCGAAGCTTCTTGCGATTTCTTTGGTGGTAAGTCCTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1747546‑1747697 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcatCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCAGCCCACACCGAGATCAAAAATGGACACGATCACTATCGGCGCATGGATAGGCCACCTCGGCCGAGGCCTGGCGCCTCGC  <  NC_002947/1747758‑1747614

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.