New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1877743	56 (0.990)	4 (0.070)	4/246	NT	7.4%	coding (314/405 nt)	PP_1683	MarR family transcriptional regulator
	?	NC_002947	= 1877784	47 (0.880)					coding (355/405 nt)	PP_1683	MarR family transcriptional regulator

GCCGAAGCCATGGGGCTCGAGCGCAGTACCCTGGGCCGCAACCTGCGTGTGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1877589‑1877743 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccacccCGAGCCGTTCAACCAGCTCTTTCTGGGCCTGCTCCCAGGCCGGGTGGGCAACGTGCAAAAGTTGCTTACCCGCCGCGGTCAACAGCACCACGCGGTTACGCTGGTCGTCGCCCTCGCCCAGTGCTACCAGCCCATCCGCCTCCA  <  NC_002947/1877784‑1877641                                                                                                                                                                                                                                                                                                             GCCGAAGCCATGGGGCTCGAGCGCAGTACCCTGGGCCGCAACCTGCGTGTGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTACCCCCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACGTTTGCACGTTGC                                                                                                                                                        >  8:289081/1‑149        CCATGGGGCTCGAGCGCAGTACCCTGGGCCGCAACCTGCGTGTGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGC                                                                                                                                                        >  3:330042/1‑142        CCATGGGGCTCGAGCGCAGTACCCTGGGCCGCAACCTGCGTGTGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGC                                                                                                                                                        <  4:330042/142‑1                                                TGTGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCCGAGCCGTTCAACCAGCTCTTTCTGGGCCTGCTCCCAGGCC                                                                                                         >  2:57944/1‑149                                                 GTGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCCGAGCCGTTCAACCAGCTCTTTCTGGGCCTGCTCCCAGGCCG                                                                                                        >  8:70585/1‑149                                                    CTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCCGAGCCGTTCAACCAGCTCTTTCTGGGCCTGCTCCCAGGCCGGG                                                                                                      <  1:57944/148‑1                                                             GATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCCGAGCCGTTCAACCAGCTCTTTCTGGGCCTGCTCCCAGGCCGGGTGGGCAACGT                                                                                            <  7:70585/149‑1                                                                                                                                                       CACCCCGAGCCGTTCAACCAGCTCTTTCTGGGCCTGCTCCCAGGCCGGGTGGGCAACGTGCAAAAGTTGCTTACCCGCCGCGGTCAACAGCACCACGCGGTTACGCTGGTCGTCGCCCTCGCCCAGTGCTACCAGCCCATCCGCCTCCA  >  8:277497/1‑149                                                                                                                                                       CACCCCGAGCCGTTCAACCAGCTCTTTCTGGGCCTGCTCCCAGGCCGGGTGGGCAACGTGCAAAAGTTGCTTACCCGCCGCGGTCAACAGCACCACGCGGTTACGCTGGTCGTCGCCCTCGCCCAGTGCTACCAGCCCATCCGCCTC    >  8:195140/1‑147                                                                                                                                                                                                                                                                                                             GCCGAAGCCATGGGGCTCGAGCGCAGTACCCTGGGCCGCAACCTGCGTGTGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1877589‑1877743 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccacccCGAGCCGTTCAACCAGCTCTTTCTGGGCCTGCTCCCAGGCCGGGTGGGCAACGTGCAAAAGTTGCTTACCCGCCGCGGTCAACAGCACCACGCGGTTACGCTGGTCGTCGCCCTCGCCCAGTGCTACCAGCCCATCCGCCTCCA  <  NC_002947/1877784‑1877641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.