New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1877743	56 (0.990)	4 (0.070)	4/246	NT	7.4%	coding (314/405 nt)	PP_1683	MarR family transcriptional regulator
	?	NC_002947	= 1877784	47 (0.880)					coding (355/405 nt)	PP_1683	MarR family transcriptional regulator

TGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGTATATACCCGCAAACCTTGCGATGTGCTGGAGATAACGACAATGACTTCGGTGTGGCGAACCAGCGGATGG  >  NC_002947/1877638‑1877926                                                                                                                                                   |                                                                                                                                               gggcggcggCGGATGGGCTGGTAGCACTGGGCGATGGCGACGCCCAGCGTAACCGCGTGGGGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCggg                                                                                                                                              <  1:351931/142‑1 (MQ=255)    tGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGgggtg                                                                                                                                           >  8:277497‑M2/1‑144 (MQ=255)      gAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGgggtg                                                                                                                                           >  8:195140‑M2/1‑142 (MQ=255)        ggCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTgggg                                                                                                                                        >  5:115946/1‑148 (MQ=255)                 gCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATg                                                                                                                              <  7:281075/149‑1 (MQ=255)                     gTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACt                                                                                                                          >  3:68333/1‑149 (MQ=255)                        gCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGt                                                                                                                       <  4:143590/149‑1 (MQ=255)                         cACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGt                                                                                                                       <  8:62863/148‑1 (MQ=255)                           cTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGAGCGGAAGCGGGATGAACTGGTGc                                                                                                                     >  4:71046/1‑148 (MQ=255)                               gcgagggcgaCGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGActg                                                                                                                <  1:218879/149‑1 (MQ=255)                                 gagggcgaCGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGActgct                                                                                                              <  6:115946/149‑1 (MQ=255)                                  agggcgaCGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGActgctg                                                                                                             <  7:123363/149‑1 (MQ=255)                                   gggcgaCGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTgg                                                                                                            <  5:245792/149‑1 (MQ=255)                                   gggcgaCGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTgg                                                                                                            <  2:296119/149‑1 (MQ=255)                                      cgacgaCCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGaa                                                                                                          >  7:39888/1‑148 (MQ=255)                                               gCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCt                                                                                                <  1:249813/149‑1 (MQ=255)                                                cGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCGCCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCt                                                                                                >  8:324993/1‑148 (MQ=255)                                                 gTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGa                                                                                              >  3:281917/1‑149 (MQ=255)                                                  tAACCGGGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCTCCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGAt                                                                                             <  3:71046/149‑1 (MQ=255)                                                    aCCGCGTGGTGCTGTTGACCGCGGCGGTTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGAtt                                                                                            <  2:280357/148‑1 (MQ=255)                                                    aCCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCGCCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGAtt                                                                                            <  7:324993/148‑1 (MQ=255)                                                      cgcgTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGa                                                                                         <  8:39888/149‑1 (MQ=255)                                                        cgTGGTGCTGTTGACCGCGTCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATa                                                                                       <  7:302799/149‑1 (MQ=255)                                                           ggtgCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGa                                                                                    <  7:289081/149‑1 (MQ=255)                                                               cTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGAt                                                                                        >  8:328756/1‑141 (MQ=255)                                                               cTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGAt                                                                                        <  7:328756/141‑1 (MQ=255)                                                                 gTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATaa                                                                              >  4:118062/1‑149 (MQ=255)                                                                        gcggcgGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACtat                                                                                <  5:117034/140‑1 (MQ=255)                                                                        gcggcgGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACtat                                                                                >  6:117034/1‑140 (MQ=255)                                                                          ggcggGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGtata                                                                     >  1:46764/1‑149 (MQ=255)                                                                                   gCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGa                                                                                    <  1:11092/125‑1 (MQ=255)                                                                                   gCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGa                                                                                    >  2:11092/1‑125 (MQ=255)                                                                                   gCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGTATATACCCGCa                                                             >  4:222085/1‑148 (MQ=255)                                                                                          ttGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGTATATACCCGCAAACCTTg                                                      <  4:281917/148‑1 (MQ=255)                                                                                              aCGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGgggtgggcaacgtgcaaaagttgcttacccgccgcggtcaacagcaccacgcggttacgctggtcgtcgccctcgcccagtgctaccagcccatc                                                 <  7:70585‑M2/149‑96 (MQ=255)                                                                                                    cccACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGTATATACCCGCAAACCTTGCGATGTGCTg                                            >  1:313268/1‑148 (MQ=255)                                                                                                     ccACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGTATATACCCGCAAACCTTGCGATGTGCTg                                            >  3:116749/1‑147 (MQ=255)                                                                                                        cccGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGgggtgggcaacgtgcaaaagttgcttacccgccgcggtcaacagcaccacgcggttacgctggtcgtcgccctcgcccagtgctaccagcccatccgcctccag                                        <  1:57944‑M2/148‑105 (MQ=255)                                                                                                          cGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGgggtgggcaacgtgcaaaagttgcttacccgccgcggtcaacagcaccacgcggttacgctggtcgtcgccctcgcccagtgctaccagcccatccgcctccagcac                                     >  8:70585‑M2/1‑42 (MQ=255)                                                                                                           ggCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGgggtgggcaacgtgcaaaagttgcttacccgccgcggtcaacagcaccacgcggttacgctggtcgtcgccctcgcccagtgctaccagcccatccgcctccagcaca                                    >  2:57944‑M2/1‑41 (MQ=255)                                                                                                           ggCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGt                                                                        >  4:4555/1‑113 (MQ=255)                                                                                                           ggCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGt                                                                        <  3:4555/113‑1 (MQ=255)                                                                                                                    gCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGTATATACCCGCAAACCTTGCGATGTGCTg                                            >  4:292953/1‑132 (MQ=255)                                                                                                                    gCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGTATATACCCGCAAACCTTGCGATGTGCTg                                            <  3:292953/132‑1 (MQ=255)                                                                                                                        gCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGTATATACCCGCAAACCTTGCGATGTGCTGGAGATAACGACAATGACTTCg                       >  4:114825/1‑149 (MQ=255)                                                                                                                              aaaGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGTATATACCCGCAAACCTTGCGATGTGCTGGAGATAACGACAATGACTTCGGTGTgg                 >  1:143507/1‑149 (MQ=255)                                                                                                                               aaGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGTATATACCCGCAAACCTTGCGATGTGCTGGAGATAACGACAATGACTTCGGTGTgg                 <  3:222085/148‑1 (MQ=255)                                                                                                                               aaGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGTATATACCCGCAAACCTTGCGATGTGCTGGAGATAACGACAATGACTTCGGTGTGGc                <  4:68333/149‑1 (MQ=255)                                                                                                                                agagCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGTATATACCCGCAAACCTTGCGATGTGCTGGAGATAACGACAATGACTTCGGTGTGGCg               <  3:118062/149‑1 (MQ=255)                                                                                                                                      ggTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGTATATACCCGCAAACCTTGCGATGTGCTg                                            <  3:260225/114‑1 (MQ=255)                                                                                                                                      ggTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGTATATACCCGCAAACCTTGCGATGTGCTg                                            >  4:260225/1‑114 (MQ=255)                                                                                                                                       gTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGTATATACCCGCAAACCTTGCGATGTGCTGGAGATAACGACAATGACTTCGGTGTGGCGAACCa          <  2:313268/147‑1 (MQ=255)                                                                                                                                            aCGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGTATATACCCGCAAACCTTGCGATGTGCTGGAGATAACGACAATGACTTCGGTGTGGCGAACCAGCGGATg   >  2:102552/1‑149 (MQ=255)                                                                                                                                             cGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGTATATACCCGCAAACCTTGCGATGTGCTGGAGATAACGACAATGACTTCGGTGTGGCGAACCAGCGGATgg  <  3:114825/149‑1 (MQ=255)                                                                                                                                             cGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGTATATACCCGCAAACCTTGCGATGTGCTGGAGATAACGACAATGACTTCGGTGTGGCGAACCAGCGGATgg  <  2:46764/149‑1 (MQ=255)                                                                                                                                                cTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGTATATACCCGCAAACCTTGCGATGTGCTGGAGATAACGACAAt                              <  6:16074/118‑1 (MQ=255)                                                                                                                                                cTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGTATATACCCGCAAACCTTGCGATGTGCTGGAGATAACGACAAt                              >  5:16074/1‑118 (MQ=255)                                                                                                                                                   |                                                                                                                                               TGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTGCGACTGCTGGAACAACTGGCCTGATTTGATACGACTATAAGCGGGTATATACCCGCAAACCTTGCGATGTGCTGGAGATAACGACAATGACTTCGGTGTGGCGAACCAGCGGATGG  >  NC_002947/1877638‑1877926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.