| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1902661 = | 47 (0.830) | 3 (0.060) | 3/248 | NT | 5.5% | coding (3212/4026 nt) | PP_1703 | assimilatory nitrate reductase/sulfite reductase |
| ? | NC_002947 | 1902710 = | 59 (1.090) | coding (3261/4026 nt) | PP_1703 | assimilatory nitrate reductase/sulfite reductase | |||||
AGCGGCAACTGCTGGGGGAAGGCGCGCAGCACATCGACCAACTGCCGGCCCCACAGCCAATCTTGCAGCTCGGCCTTGCATTCAGGCTGCAGCAAGCGCTGCAGGTCAGGCGCGTTGCTGGCAAATGCCTGCAGTTGTTGCGCAGTGACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1902811‑1902661‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgacctGCAGCGCTTGCTGCAGCCTGAATGCAAGGCCGAGCTGCAAGATTGGCTGTGGGGCCGGCAGTTGGTCGATGTGCTGCGCGCCTTCCCCCAGCAGTTGCCGCTGGCCAGCTGGCTGGAACTGCTCAAACCATTGCAGCCGCGGCT > NC_002947/1902710‑1902853 AGCGGCAACTGCTGGGGGAAGGCGCGCAGCACATCGACCAACTGCCGGCCCCACAGCCAATCTTGCAGCTCGGCCTTGCATTCAGGCTGCAGCAAGCGCTGCAGGTCAGGCGCGTTGCTGGCAAATGCCTGCAGTTGTTGCGCAGTGAC < 6:55254/149‑1 GGCAACTGCTGGGGGAAGGCGCGCAGCACATCGACCAACTGCCGGCCCCACAGCCAATCTTGCAGCTCGGCCTTGCATTCAGGCTGCAGCAAGCGCTGCAGGTCAGGCGCGTTGCTGGCAAATGCCTGCAGTTGTTGCGCAGT > 5:129312/1‑143 GGCAACTGCTGGGGGAAGGCGCGCAGCACATCGACCAACTGCCGGCCCCACAGCCAATCTTGCAGCTCGGCCTTGCATTCAGGCTGCAGCAAGCGCTGCAGGTCAGGCGCGTTGCTGGCAAATGCCTGCAGTTGTTGCGCAGT < 6:129312/143‑1 CTGCAGGTCAGGCGCGTTGCT‑GCAAATGCCTGCAGTTGTTGCGCAGTGACCTGCAGCGCTTGCTGCAGCCTGAATGCAAGGCCGAGCTGCAAGATTGGCTGTGGGGCCGGCAGTTGGTCGATGTGCTGCGCGCCTTCCCCCAGCAGTTG > 2:170071/1‑149 TGCAGGTCAGGCGCGTTGCTGGCAAATGCCTGCAGTTGTTGCGCAGTGACCTGCAGCGCTTGCTGCAGCCTGAATGCAAGGCCGAGCTGCAAGATT < 5:129531/96‑1 TGCAGGTCAGGCGCGTTGCTGGCAAATGCCTGCAGTTGTTGCGCAGTGACCTGCAGCGCTTGCTGCAGCCTGAATGCAAGGCCGAGCTGCAAGATT > 6:129531/1‑96 TGACCTGCAGCGCTTGCTGCAGCCTGAATGCAAGGCCGAGCTGCAAGATTGGCTGTGGGGCCGGCAGTTGGTCGATGTGCTGCGCGCCTTCCCCCAGCAGTTGCCGCTGGCCAGCTGGCTGGAACTGCTCAAACCATTGCAGCCGCGGC > 3:31290/1‑149 ACCTGCAGCGCTTGCTGCAGCCTGAATGCAAGGCCGAGCTGCAAGATTGGCTGTGGGGCCGGCAGTTGGTCGATGTGCTGCGCGCCTTCCCCCAGCAGTTGCCGCTGGCCAGCTGGCTGGAACTGCTCAAACCATTGCAGCCGCGGCT < 4:170793/148‑1 AGCGGCAACTGCTGGGGGAAGGCGCGCAGCACATCGACCAACTGCCGGCCCCACAGCCAATCTTGCAGCTCGGCCTTGCATTCAGGCTGCAGCAAGCGCTGCAGGTCAGGCGCGTTGCTGGCAAATGCCTGCAGTTGTTGCGCAGTGACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1902811‑1902661‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgacctGCAGCGCTTGCTGCAGCCTGAATGCAAGGCCGAGCTGCAAGATTGGCTGTGGGGCCGGCAGTTGGTCGATGTGCTGCGCGCCTTCCCCCAGCAGTTGCCGCTGGCCAGCTGGCTGGAACTGCTCAAACCATTGCAGCCGCGGCT > NC_002947/1902710‑1902853 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |