New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1902661 =	47 (0.830)	3 (0.060)	3/248	NT	5.5%	coding (3212/4026 nt)	PP_1703	assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1902710 =	59 (1.090)					coding (3261/4026 nt)	PP_1703	assimilatory nitrate reductase/sulfite reductase

CCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑CAAGGCCGAGCTGCAAGATTGGCTGTGGGGCCGGCAGTTGGTCGATGTGCTGCGCGCCTTCCCC  >  NC_002947/1902514‑1902797                                                                                                                                                    |                                                                                                                                          cccTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAg                                                                                                                                          <  8:310185/149‑1 (MQ=255)    agccgcggctgcaatggtttgagcagttccagccagctggccagcggcaactgctgggggaaggcgcgcagcacatcgaccaactgccggccccacagccaatcttgcagctcggccttgcattcaggctgcagcaagcgctgcAGGt                                                                                                                                        <  4:170793‑M1/4‑1 (MQ=255)     gccgcggctgcaatggtttgagcagttccagccagctggccagcggcaactgctgggggaaggcgcgcagcacatcgaccaactgccggccccacagccaatcttgcagctcggccttgcattcaggctgcagcaagcgctgcAGGTCa                                                                                                                                      >  3:31290‑M1/144‑149 (MQ=255)        accagggCCGGGCAGTTGCGCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTg                                                                                                                                   >  5:156590/6‑149 (MQ=255)          tATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTgcg                                                                                                                                 >  3:173625/1‑149 (MQ=255)               ccGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTAT‑GTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGcaacaa                                                                                                                           >  8:309896/1‑149 (MQ=255)                 gcgcAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCaacaac                                                                                                                          >  6:32505/1‑149 (MQ=255)                   gctgttGCGCGGGCCTGGTGGATGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGTTCGAGCTTAAAGGTCATAGCACCATGCCATTGGGCGAAGCCCTGCGAGCACACCTGGAAATTGGCTAGGTCACTGCGCAACAACTg                                                                                                                        <  6:156590/144‑1 (MQ=255)                           ccGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCAtt                                                                                                                <  6:194390/149‑1 (MQ=255)                            cGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCAttt                                                                                                               <  5:32505/149‑1 (MQ=255)                                    gtggAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTgcgc                                                                                                                                <  4:206133/124‑1 (MQ=255)                                    gtggAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTgcgc                                                                                                                                >  3:206133/1‑124 (MQ=255)                                    gtggAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCTCAACAACTGCAGTCATTTGACAGCaa                                                                                                       >  8:90852/1‑149 (MQ=255)                                            gctgctGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCt                                                                                                >  8:262038/1‑148 (MQ=255)                                                ctgACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGc                                                                                                                       <  3:183787/121‑1 (MQ=255)                                                ctgACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGc                                                                                                                       >  4:183787/1‑121 (MQ=255)                                                ctgACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGAc                                                                                             <  2:247939/147‑1 (MQ=255)                                                   caactgctgggggaaggcgcgcagcacatcgaccaactgccggccccacagccaatcttgcagctcggccttgcattcaggctgcagcaagcgctgcAGGTCACTGCGCAACAACTGCAGGCATTTGC‑AGCAACGCGCCTGACCTGCAg                                                                                       >  2:170071‑M1/98‑149 (MQ=255)                                                       tGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAgcgc                                                                                    >  5:122134/1‑149 (MQ=255)                                                           gCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAgcaagcgc                                                                                >  7:38898/1‑143 (MQ=255)                                                             aGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTtgctg                                                                              >  5:51536/1‑149 (MQ=255)                                                               cTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTtgctg                                                                              >  2:258021/1‑147 (MQ=255)                                                                           gCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGAGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑c                                                                 >  3:69689/1‑147 (MQ=255)                                                                            cTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑CAAg                                                              <  2:225261/149‑1 (MQ=255)                                                                             tATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAAt                                                                    <  7:247280/143‑1 (MQ=255)                                                                             tATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAAt                                                                    >  8:247280/1‑143 (MQ=255)                                                                                      gCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑CAAGGCCGAGCTGc                                                    <  2:176138/149‑1 (MQ=255)                                                                                         tAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑CAAGGCCGAGCTGc                                                    >  7:257959/1‑146 (MQ=255)                                                                                              gTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGATTG‑CAAGGCCGAGCTGCAAGATTgg                                            <  5:74615/149‑1 (MQ=255)                                                                                                cATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑CAAGGCCGAGCTGCAAGATTGGCt                                          >  2:205064/1‑149 (MQ=255)                                                                                                 aTAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑Caa                                                               <  5:119691/127‑1 (MQ=255)                                                                                                 aTAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑Caa                                                               >  6:119691/1‑127 (MQ=255)                                                                                                     cACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑CAAGGCCGAGCTGCAAGATTGGCTGTggg                                     >  7:81011/1‑149 (MQ=255)                                                                                                     cACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGAGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑CAAGGCCGAGCTGCAAGATTGGCTGTggg                                     <  4:69689/149‑1 (MQ=255)                                                                                                      aCCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑CAAGGCCGAGCTGCAAGATTGGCTGTgggg                                    <  6:51536/149‑1 (MQ=255)                                                                                                        cATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑CAAGGCCGAGCTGCAAGATTGGCTGTGGGGcc                                  <  8:81011/149‑1 (MQ=255)                                                                                                        aatcttgcagctcggccttgcattcaggctgcagcaagcgctgcAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCa                                                                                        >  6:129531‑M1/45‑96 (MQ=255)                                                                                                        aatcttgcagctcggccttgcattcaggctgcagcaagcgctgcAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCa                                                                                        <  5:129531‑M1/52‑1 (MQ=255)                                                                                                            ccATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGTAGCCTGAATG‑CAAGGCCGAGCTGCAAGATTGGCTGTGGGGCCGGc                               <  1:258021/148‑1 (MQ=255)                                                                                                            ccATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑CAAGGCCGAGCTGCAAGATTGGCTGTGGGGCCGGCa                              <  7:309896/149‑1 (MQ=255)                                                                                                                 ggCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑CAAGGCCGAGCTGCAAGATTGGCTGTGGGGCCGGCAGTTg                          <  7:262038/148‑1 (MQ=255)                                                                                                                      aaGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑CAAGGCCGAGCTGCAAGATTGGCTGTGGGGCCGGCAGTTGGTCGAt                    >  2:350298/1‑149 (MQ=255)                                                                                                                        gCCCTGCGAGCACACCTGGAAATTGACAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCTCTTGCTGCAGCCTGAATG‑CAAGGCCGAGCTGCAAGATTGGCTGTGGGGCCGGCAGGTGGTCGAtgt                  >  8:288403/1‑149 (MQ=255)                                                                                                                           cTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑CAAGGCCGAGCTGCAAGATTGGCTGTGGGGCCGGCAGTTGGTCGATGtgct               >  7:114767/1‑149 (MQ=255)                                                                                                                              cGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGGAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAACG‑CAAGGCCGAGCTGCAAGATTGGCTGTGGTGCCGGCAGTTGGTCGATGtgctgc             <  4:173625/148‑1 (MQ=255)                                                                                                                                   acacCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑CAAGGCCGAGCTGCAAGATTGGCTGTGGGGCCGGCAGTTGGTCGATGTGCTGCGCGCCt       >  1:260278/1‑149 (MQ=255)                                                                                                                                     acCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑CAAGGCCGAGCTGc                                                    <  6:327981/102‑1 (MQ=255)                                                                                                                                     acCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑CAAGGCCGAGCTGc                                                    >  5:327981/1‑102 (MQ=255)                                                                                                                                        tGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑CAAGGCCGAGCTGCAAGATTGGCTGTGGGGCCGGCAGTTGGTc                       >  2:251234/1‑128 (MQ=255)                                                                                                                                        tGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑CAAGGCCGAGCTGCAAGATTGGCTGTGGGGCCGGCAGTTGGTCGATGTGCTGCGCGCCTTcccc  >  5:352479/1‑149 (MQ=255)                                                                                                                                        ctgAAATTGCCAAGGTCACTGCCCAACAACTGCACGCAATTGCCAGCAACGCGCCTGACCTTCATCGCTTGCTGCATCCTGAAAGCCAAGGCCGAGCTGCAAGATTGGCTGTGGGGCCGGCAGTTGGTc                       <  1:251234/127‑1 (MQ=255)                                                                                                                                           aaaTTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑CAAGGCCGAGCTGCAAGATTGGCTGTGGGGc                                   <  3:204510/113‑1 (MQ=255)                                                                                                                                           aaaTTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑CAAGGCCGAGCTGCAAGATTGGCTGTGGGGc                                   >  4:204510/1‑113 (MQ=255)                                                                                                                                                    |                                                                                                                                          CCCTGGGCGTATGGCCGCGCAACTGCCCGGCCCTGGTGGAAGAGCTGCTGACGCTGATGCAGCTCGATGGCCAGGCTATGGTCGAGCTTAAAGGTCATAGCACCATGCCATTGGCCGAAGCCCTGCGAGCACACCTGGAAATTGCCAAGGTCACTGCGCAACAACTGCAGGCATTTGCCAGCAACGCGCCTGACCTGCAGCGCTTGCTGCAGCCTGAATG‑CAAGGCCGAGCTGCAAGATTGGCTGTGGGGCCGGCAGTTGGTCGATGTGCTGCGCGCCTTCCCC  >  NC_002947/1902514‑1902797

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.