New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1904184 =	53 (0.940)	3 (0.060)	3/250	NT	5.4%	coding (439/2553 nt)	nirB	nitrite reductase large subunit
	?	NC_002947	1904226 =	55 (1.010)					coding (481/2553 nt)	nirB	nitrite reductase large subunit

GGCACCGCCCTCGCCGTCCAGCTGTACCGGCATCAGCCGTGGGGCGAATTCCACCACGTGAGCTTCCAGCCCCAGCGACTTGAGGGCGTTGGCCGCTTCCAGGCCAAGCAGGCCGCCGCCGACCACCACCCCTCGGCGGGCACCGGCTGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1904336‑1904184 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcCTGCTTGGCCTGGAAGCGGCCAACGCCCTCAAGTCGCTGGGGCTGGAAGCTCACGTGGTGGAATTCGCCCCACGGCTGATGCCGGTACAGCTGGACGGCGAGGGCGGTGCCGCGTTGAAGGCGCAGATCGAAGCGCTAGGTGTGGGG  >  NC_002947/1904226‑1904372                                                                                                                                                                                                                                                                                                              GGCACCGCCCTCGCCGTCCAGCTGTACCGGCATCAGCCGTGGGGCGAATTCCACCACGTGAGCTTCCAGCCCCAGCGACTTGAGGGCGTTGGCCGCTTCCAGGCCAAGCAGGCCGCCGCCGACCACCACCCCTCGGCGGGCACCGGCTG                                                                                                                                                         <  8:235947/149‑1    ACCGCCCTCGCCGTCCAGCTGTACCGGCATCAGCCGTGGGGCGAATTCCACCACGTGAGCTTCCAGCCCCAGCGACTTGAGGGCGTTGGCCGCTTCCAGGCCAAGCAGGCCGCCGCCGACCACCACCCCTCGGCGGGCACCGGCTGCGG                                                                                                                                                      >  6:62825/1‑149                                                 TTCCACCACGTGAGCTTCCAGCCCCAGCGACTTGAGGGCGTTGGCCGCTTCCAGGCCAAGCAGGCCGCCGCCGACCACCACCCCTCGGCGGGCACCGGCTGCGGC                                                                                                                                                     >  3:265476/1‑105                                                 TTCCACCACGTGAGCTTCCAGCCCCAGCGACTTGAGGGCGTTGGCCGCTTCCAGGCCAAGCAGGCCGCCGCCGACCACCACCCCTCGGCGGGCACCGGCTGCGGC                                                                                                                                                     <  4:265476/105‑1                                                                                                       GCCAAGCAGGCCGCCGCCGACCACCACCCCTCGGCGGGCACCGGCTGCGGCCTGCTTGGCCTGGAAGCGGCCAACGCCCTCAAGTCGCTGGGGCTGGAAGCTCACGTGGTGGAATTCGCCCCACGGCTGATGCCGGTACAGCTGGACGG                                                   >  4:147302/1‑149                                                                                                              AGGCCGCCGCCGACCTCCACCCCTCGGCGGGCACCGGCTGCGGCCTGCTTGGCCTGGAAGCGGCCAACGCCCTCAAGTCGCTGGGGGTGGAAGCTCACGTGGTGGAATTCGCCCCACGGGTGATGCCGGTACAGC                                                          <  1:117352/135‑1                                                                                                                  CGCCGCCGACCACCACCCCTCGGCGGGCACCGGCTGCGGCCTGCTTGGCCTGGAAGCGGCCAACGCCCTCAAGTCGCTGGGGCTGGAAGCTCACGTGGTGGAATTCGCCCCACGGCTGATGCCGGTACAGCTGGACGGCGAGGGCGGTG                                        <  3:147302/149‑1                                                                                                                                                        GCCTGCTTGGCCTGGAAGCGGCCAACGCCCTCAAGTCGCTGGGGCTGGAAGCTCACGTGGTGGAATTCTCCCCACGGCTGATGCCGGTACAGCTGGACGGCGAGGGCGGTGCCGCGTTGAAGGCGCAGATCGAAGCGCTAGGTGTGGGG  <  7:235947/149‑1                                                                                                                                                                                                                                                                                                              GGCACCGCCCTCGCCGTCCAGCTGTACCGGCATCAGCCGTGGGGCGAATTCCACCACGTGAGCTTCCAGCCCCAGCGACTTGAGGGCGTTGGCCGCTTCCAGGCCAAGCAGGCCGCCGCCGACCACCACCCCTCGGCGGGCACCGGCTGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1904336‑1904184 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcCTGCTTGGCCTGGAAGCGGCCAACGCCCTCAAGTCGCTGGGGCTGGAAGCTCACGTGGTGGAATTCGCCCCACGGCTGATGCCGGTACAGCTGGACGGCGAGGGCGGTGCCGCGTTGAAGGCGCAGATCGAAGCGCTAGGTGTGGGG  >  NC_002947/1904226‑1904372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.