New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2050595	22 (0.390)	6 (0.150)	6/186	NT	22.4%	intergenic (‑88/+87)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	= 2050631	26 (0.640)					intergenic (‑124/+51)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein

TCGGCCTTGGGCTTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2050413‑2050595 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgcgggcctcttcgcgggtgaacccgctcctacAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACGATTTTTCCCTG  <  NC_002947/2050631‑2050484                                                                                                                                                                                                                                                                                                                                             TCGGCCTTGGGCTTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCT                                                                                                                                                                                        <  8:195751/149‑1   GGCCTTGGGCTTGCCGAGTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTGGAACAGGGAAAAATCGGCGTCTTGCATGATGCGTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGT                                                                                                                                                                                      <  7:154766/149‑1       TTGGGCTTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGG                                                                                                                                                                                  <  4:171082/149‑1        TGGGCTTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGG                                                                                                                                                                                 >  4:77441/1‑149          GGCTTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGC                                                                                                                                                                                <  3:20349/148‑1             TTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCGTGAACAGGGAAAAATCGTCGTCGTGCCTGATGCCTCCCCGTCGGCGGCGGAGTTTACGCGCCTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCT                                                                                                                                                                            >  7:141435/1‑149                   ACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGG                                                                                                                                                                      >  8:58517/1‑149                   ACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGG                                                                                                                                                                      <  4:353466/149‑1                     TTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGT                                                                                                                                                                    >  5:370548/1‑149                          CACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACC                                                                                                                                                               >  2:93406/1‑149                                  TGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCgt                                                                                                                                                       >  3:321006/1‑147                                       GATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGC                                                                                                                                                            >  7:320053/1‑139                                       GATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGC                                                                                                                                                            <  8:320053/139‑1                                         TCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCATGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCT                                                                                                                                                                            >  4:290448/1‑121                                              TTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTAC                                                                                                                                                      <  6:23272/138‑1                                              TTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTAC                                                                                                                                                      >  5:23272/1‑138                                                     CGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGTTGTGCAGCC                                                                                                                                                                                         <  1:16267/96‑1                                                     CGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCC                                                                                                                                                                                         >  2:16267/1‑96                                                                   TTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACAT                                                                                                                      >  5:362512/1‑149                                                                           GGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAG                                                                                                              <  6:85863/149‑1                                                                               AAATCGTCGTCTTGCATGATGCCTCCACTTAGGCGGCGTAGTTTACGCGACTGTGGGGCTGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGC                                                                                                          <  5:220211/149‑1                                                                                    GTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGT                                                                                                      <  6:362512/148‑1                                                                                     TCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCG                                                                                                                 >  7:244861/1‑136                                                                                     TCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCG                                                                                                                 <  8:244861/136‑1                                                                                                                                                   CCTGTGCGGGCCTCTGCGCGGGTGAACCCGCTCCTACCGGCACCCCGCCGTCGTCGGGCGCTGTGACACCCCCGTAGGCCCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTA                                      <  6:164187/149‑1                                                                                                                                                    ggGTGGGGGCGTCTTCGCGGTTTAACCGGCTCTTACCGGCACCCCGCCGTCTTTGGGCTCTGTCACATCCCCGTCGGCGCGGTTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTAC                                     <  2:104405/147‑1                                                                                                                                                         CGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGA                                <  2:54927/149‑1                                                                                                                                                           GGCCTCTTCGCGGGGGACCCCGCTCCTACCGCCACCCCGCCGTCTTCGGGCTCTGGCACATCCCCGTCGGAGCGGGTTAACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGG                              <  3:239997/149‑1                                                                                                                                                                 TTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGGCTTCGGGCTCTGTGACATCCCCCTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCCCACCGCCCCACAGTCGCGTAAACTACGCCGCCGACCTGGAGGCAac                          >  2:223547/1‑145                                                                                                                                                                   CGCGTGTCAACCCGCTCCTACTGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCAT                        <  7:326460/147‑1                                                                                                                                                                        GTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGAC                 >  3:77441/1‑149                                                                                                                                                                         TGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACG                >  1:185240/1‑149                                                                                                                                                                         TGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACG                >  7:169414/1‑149                                                                                                                                                                             CCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACG             >  7:127607/1‑148                                                                                                                                                                              CCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGA                                                                                         >  4:59148/1‑71                                                                                                                                                                                GCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACGATTT         >  3:13812/1‑149                                                                                                                                                                                  gCCTACCGGCCCCCCGCCGTCTGCGGGCTCGGTGACAACCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACGATTTTT       <  8:248784/148‑1                                                                                                                                                                                   CCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACGATTTTTC      >  6:370548/1‑149                                                                                                                                                                                    CTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGCAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACGATTTTTCC     >  6:349108/1‑149                                                                                                                                                                                    CTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACGATTTTTCC     >  6:27882/1‑149                                                                                                                                                                                    CTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGA                                <  5:179445/122‑1                                                                                                                                                                                    CTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGA                                >  6:179445/1‑122                                                                                                                                                                                    CTACAGGCACACCGCCGTCTTAGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACACGCGAAGAGGCCCGCACAGGATGCAAACCGCCCAACAGTCGCGTAAACTAAGCCGCCTAGGTGGAGGCATCATGCAAGACGACGATTTTTCC     >  6:266508/1‑149                                                                                                                                                                                      ACAGGCA‑CCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGA                  <  7:117250/133‑1                                                                                                                                                                                       CAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACGATTTTTCCCTG  >  6:89422/1‑149                                                                                                                                                                                                                                                                                                                                             TCGGCCTTGGGCTTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2050413‑2050595 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgcgggcctcttcgcgggtgaacccgctcctacAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACGATTTTTCCCTG  <  NC_002947/2050631‑2050484

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.