New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2050595	22 (0.390)	6 (0.150)	6/186	NT	22.4%	intergenic (‑88/+87)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	= 2050631	26 (0.640)					intergenic (‑124/+51)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein

CAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCA  >  NC_002947/2050484‑2050777                                                                                                                                                    |                                                                                                                                                   cAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTg                                                                                                                                                   >  6:89422‑M2/1‑148 (MQ=255)    ggAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtag                                                                                                                                                >  6:27882‑M2/1‑145 (MQ=255)    ggAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTGCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtag                                                                                                                                                >  6:349108‑M2/1‑145 (MQ=255)    ggAAAAATCGTCGTCTTGCATGATGCCTCCACCTAGGCGGCTTAGTTTACGCGACTGTTGGGCGGTTTGCATCCTGTGCGGGCCTCTTCGCGTGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCTAAGACGGCGGTGTGCCTgtag                                                                                                                                                >  6:266508‑M2/1‑145 (MQ=255)     gAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtagg                                                                                                                                               >  6:370548‑M2/1‑144 (MQ=255)      aaaaaTCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGTTGTCACCGAGCCCGCAGACGGCGGGGGGCCGgtaggc                                                                                                                                              <  8:248784‑M2/149‑7 (MQ=255)        aaaTCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagc                                                                                                                                            >  3:13812‑M2/1‑141 (MQ=255)            cgtcgtCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcggg                                                                                                                                         >  7:127607‑M2/1‑137 (MQ=255)               cgtcTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttca                                                                                                                                     >  1:185240‑M2/1‑134 (MQ=255)               cgtcTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttca                                                                                                                                     >  7:169414‑M2/1‑134 (MQ=255)                gtcTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcac                                                                                                                                    >  3:77441‑M2/1‑133 (MQ=255)                 tcTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGG‑TGCCTgt                                                                                                                                                  <  7:117250‑M2/133‑3 (MQ=255)                       atgatgCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCAgtaggagcgggttgacacgcg                                                                                                                               <  7:326460‑M2/147‑22 (MQ=255)                         gttgccTCCAGGTCGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGGGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTAGGGGGATGTCACAGAGCCCGAAGCCGGCGGGGTGCCTgtaggagcgggttcacccgcgaa                                                                                                                             >  2:223547‑M2/3‑124 (MQ=255)                             ccTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTTAACCCGCTCCGACGGGGATGTGCCAGAGCCCGAAGACGGCGGGGTGGCGgtaggagcggggtcccccgcgaagaggcc                                                                                                                       <  3:239997‑M2/149‑30 (MQ=255)                               tCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccg                                                                                                                     <  2:54927‑M2/149‑32 (MQ=255)                               tCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtag                                                                                                                                                >  6:179445‑M2/1‑118 (MQ=255)                               tCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtag                                                                                                                                                <  5:179445‑M2/122‑5 (MQ=255)                                    gTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAAACCGCGCCGACGGGGATGTGACAGAGCCCAAAGACGGCGGGGTGCCGgtaagagccggttaaaccgcgaagacgcccccaccc                                                                                                                <  2:104405‑M2/149‑37 (MQ=255)                                     tAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGGGCCTACGGGGGTGTCACAGCGCCCGACGACGGCGGGGTGCCGgtaggagcgggttcacccgcgcagaggcccgcacagg                                                                                                               <  6:164187‑M2/149‑38 (MQ=255)                                                    aCGCGAGTGGGGGGGGGTGGGCCGCGTGGGCGGGCCTCTTCGCGGTTTACCCCGGTCCTACGGGGAGTACACAGCCCCCTAAGCGGGCGGGGGGCCTGTCGGCGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCAt                                                                                                 <  8:326460/148‑1 (MQ=19)                                                                  cGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCGGCTCCTACGGGTATGTCCCAGAGCCCGAAGACGGCGGGGTGCGTGTAGTAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCttcttc                                                                                  <  4:239997/149‑1 (MQ=39)                                                                                        tctTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgg                                                                                                                                          >  4:59148‑M2/1‑61 (MQ=255)                                                                                         ctTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAg                                                           >  2:11015/1‑149 (MQ=255)                                                                                          ttCGCGGGTGAACCCCCTCCTAAGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACACGTTAAGCAAAACCATCAATCGTGCTTATTAATCAGGTGCGGCGACAGGTTAAg                                                           >  2:284272/1‑148 (MQ=39)                                                                                          tccgcgGGTCACCCCGCCCGTCCGGGGATGACACAGCCCCCGACGCGGGGGGGGGGCCTGTAGGAGCGGGTACACCCGCTAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTaa                                                            <  1:93406/145‑1 (MQ=255)                                                                                            cgcgGGTGAACCCGCGCCTAGGGGGTTGTCACAGAGCCCAACGCCGGCGGGGGGCCTGTAGGCGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCt                                                         <  1:104405/148‑1 (MQ=38)                                                                                                ggTTAACCCGCTCCTACGGGTATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTcccgc                                                    <  1:284272/149‑1 (MQ=255)                                                                                                     aCCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacgac                                                <  6:362512‑M2/148‑101 (MQ=255)                                                                                                      cccGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCgcgg                                              >  4:20386/1‑149 (MQ=255)                                                                                                         gCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacacagccccacagtcgcgtaaactacgccgcctaagtggaggcatcatgcaagacgacgattt                                           <  5:220211‑M2/149‑106 (MQ=255)                                                                                                            ccTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAg                                        <  3:20386/149‑1 (MQ=255)                                                                                                             cTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacgacgatttttcc                                       <  6:85863‑M2/149‑110 (MQ=255)                                                                                                             cTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGc                                       >  4:186570/1‑149 (MQ=255)                                                                                                              tACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCg                                      >  8:193155/1‑149 (MQ=255)                                                                                                               aCGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTgc                                                                         <  2:155404/113‑1 (MQ=255)                                                                                                               aCGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCACGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTAATCAGGTgc                                                                         >  1:155404/1‑113 (MQ=255)                                                                                                                cGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacga                                                 <  8:244861‑M2/136‑100 (MQ=255)                                                                                                                cGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacga                                                 >  7:244861‑M2/1‑37 (MQ=255)                                                                                                                cGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACGGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCCACAGGTTAAGCTCCCGCCCGCGGCGCAAGCg                                      <  1:54927/147‑1 (MQ=255)                                                                                                                   ggATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCttcttc                                                                                  >  7:16754/1‑100 (MQ=255)                                                                                                                   ggATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCttcttc                                                                                  <  8:16754/100‑1 (MQ=255)                                                                                                                     aggTCACACAGCCCTAAGCCGGCGGGGCGCCTGTAGCCGCGGGTTCCCCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACgg                               <  5:164187/147‑1 (MQ=255)                                                                                                                     aTGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacgacgatttttccctgttcaa                               >  5:362512‑M2/1‑32 (MQ=255)                                                                                                                     aTGTCACACAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACgg                               <  1:11015/149‑1 (MQ=255)                                                                                                                        ccacaGACCCCGACGACGGCGGGGGGCCTGTAGCCGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCt                             <  3:44420/147‑1 (MQ=39)                                                                                                                         cacaGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCgg                                     >  4:268964/1‑139 (MQ=255)                                                                                                                         cacaGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCgg                                     <  3:268964/139‑1 (MQ=255)                                                                                                                          acaGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTgcg                          >  7:137680/1‑149 (MQ=255)                                                                                                                          acaGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTgcg                          >  6:50225/1‑149 (MQ=255)                                                                                                                            agagCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGcgcc                        >  5:62954/1‑149 (MQ=255)                                                                                                                                     cccggggggggTGCCTGTCGGAGGGGTTCCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAac               <  3:14837/142‑1 (MQ=255)                                                                                                                                       ccgccggGGTGCCTGAAGGACCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAacgc             <  7:248784/145‑1 (MQ=255)                                                                                                                                                  ccTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCca  >  4:120517/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   CAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCA  >  NC_002947/2050484‑2050777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.