New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2062881	42 (0.740)	5 (0.090)	4/244	NT	10.8%	coding (1796/2058 nt)	PP_1838	membrane protein
	?	NC_002947	= 2062912	43 (0.810)					coding (1827/2058 nt)	PP_1838	membrane protein

CCGCTGCTGCTGATTGCCCCGGGCATTCAGGAGAAGTTCGGTGCGGTGAATCACACCGTGGGTACCCAGGTCGACATCGTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2062727‑2062881 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcccgaCGGCTTGATCATGCCTACGCCCTGGTCACCCTCGGGCAGGTTGAGCAGGTCGCGCCCCCAGCACTGGTGGCGAGCCTTGCCACCCAGGCGGCCCATGATGGTCGGCACGATGTCGACCTGGGTACCCACGGTGTGATTCACCGCACC  <  NC_002947/2062912‑2062766                                                                                                                                                                                                                                                                                                                CCGCTGCTGCTGATTGCCCCGGGCATTCAGGAGAAGTTCGGTGCGGTGAATCACACCGTGGGTACCCAGGTCGACATCGTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACC                                                                                                                                                            <  2:349221/148‑1           TGATTGCCCCGGGCATTCAGGAGAAGTTCGGTGCGGTGAATCACACCGTGGGTACCCAGGTCGACATCGTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGACGGC                                                                                                                                                 >  5:356552/1‑149                                              tTGAATCACACCGTGGGTACCCAGGTCGACATCGTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGACGGCTTGATCATGCCTACGCCCTGGTCACCCTCGGGCAG                                                                                                              <  7:150814/148‑1                                               TGAATCACACCGTGGGTACCCAGGTCGACATCGTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGACGGCTTGATCATGCCTACGCCCTGGTCACCCTCGGGCAGG                                                                                                             <  6:356552/149‑1                                                    CACACCGTGGGTACCCAGGTCGACATCGTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGACGGCTTGATCATGCCTACGCCCTGGTCACCCTCGGGCAGGacatc                                                                                                        >  3:10074/1‑144                                                    CACACCGTGGGTACCCAGGTCGACATCGTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGACGGCTTGATCATGCCTACGCCCTGGTCACCCTCGGGCAG                                                                                                              <  4:10074/143‑1                                                      CACCGTGGGTACCCAGGTCGACATCGTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTC‑‑GCTGCCCGACGGCTTGATCATGCCTACGCCCTGGTCACCCTCGGGCAGGTTGAGCAGG                                                                                                    <  2:196271/149‑1                                                                                                                                                         CGACGGCTTGATCATGCCTACGCCCTGGTCACCCTCGGGCAGGTTGAGCAGGTCGCGCCCCCAGCACTGGTGGCGAGCCTTGCCACCCAGGCGGCCCATGATGGTCGGCACGATGTCGACCTGGGTACCCCCGGTGTGATTCACCGCAC   >  2:67307/1‑149                                                                                                                                                          GACGGCTTGATCATGCCTACGCCCTGGTCACCCTCGGGCAGGTTGAGCAGGTCGCGCCCCCAGCACTGGTGGCGAGCCTTGCCACCCAGGCGGCCCATGATGGTCGGCACGATGTCGACCTGGGTACCCACGGTGTGATTCACCGCACC  >  2:14453/1‑149                                                                                                                                                                                                                                                                                                                CCGCTGCTGCTGATTGCCCCGGGCATTCAGGAGAAGTTCGGTGCGGTGAATCACACCGTGGGTACCCAGGTCGACATCGTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2062727‑2062881 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcccgaCGGCTTGATCATGCCTACGCCCTGGTCACCCTCGGGCAGGTTGAGCAGGTCGCGCCCCCAGCACTGGTGGCGAGCCTTGCCACCCAGGCGGCCCATGATGGTCGGCACGATGTCGACCTGGGTACCCACGGTGTGATTCACCGCACC  <  NC_002947/2062912‑2062766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.