New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2062881	42 (0.740)	5 (0.090)	4/244	NT	10.8%	coding (1796/2058 nt)	PP_1838	membrane protein
	?	NC_002947	= 2062912	43 (0.810)					coding (1827/2058 nt)	PP_1838	membrane protein

GGTGCGGTGAATCACACCGTGGGTACCCAGGTCGACATCGTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTACCGCTACCAGTTGGGCAGCGAGTTCAAGGCCGAACTGATCGAAAGCCCGGACCAGCCGGAAATGCTC  >  NC_002947/2062766‑2063059                                                                                                                                                   |                                                                                                                                                    ggtgcggtgAATCACACCGTGGGTACCCAGGTCGACATCGTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGtc                                                                                                                                                   >  2:14453‑M2/1‑147 (MQ=255)  gtgcggtgAATCACACCGGGGGTACCCAGGTCGACATCGTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGtcg                                                                                                                                                  >  2:67307‑M2/1‑146 (MQ=255)          aaTCACACCGTGGGTACCCAGGTCGACATCGTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGa                                                                                                                                          <  5:173589/149‑1 (MQ=255)               cacCGTGGGTACCCAGGTCGACATCGTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAg                                                                                                                                      >  4:294480/1‑148 (MQ=255)               cacCGTGGGTACCCAGGTCGACATCGTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGa                                                                                                                                     <  3:294480/149‑1 (MQ=255)                    tGGGTACCCAGGTCGACATCGTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTc                                                                                                                                <  2:80027/149‑1 (MQ=255)                                tCGACATCGTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAg                                                                                                                    <  3:323288/149‑1 (MQ=255)                                 cGACATCGTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAgg                                                                                                                   <  7:334757/149‑1 (MQ=255)                                  gACATCGTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAgg                                                                                                                   <  4:173132/148‑1 (MQ=255)                                  gACATCGTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAgg                                                                                                                   >  3:173132/1‑148 (MQ=255)                                   aCATCGTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGt                                                                                                                 <  7:233463/149‑1 (MQ=255)                                        gTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGTGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGAcc                                                                                                             <  2:294144/148‑1 (MQ=255)                                            cGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATc                                                                                                        <  4:343986/149‑1 (MQ=255)                                                catcatGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGa                                                                                                    >  1:217848/1‑149 (MQ=255)                                                 atcatGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGAt                                                                                                   <  7:62231/149‑1 (MQ=255)                                                  tcatGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATc                                                                                                  >  5:190378/1‑149 (MQ=255)                                                        gccgccTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTcc                                                                                            <  6:190378/149‑1 (MQ=255)                                                        gccgccTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGCTGCAGGGTGACCGTATCCTGATCGAGTc                                                                                             >  6:263959/1‑148 (MQ=255)                                                               tggTGGCGAGCCTTGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACa                                                                                     >  6:121634/2‑149 (MQ=255)                                                                  tGGCGAGCCTTGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGa                                                                                  <  5:121634/149‑1 (MQ=255)                                                                  tGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACAt                                                                                    >  3:242555/1‑147 (MQ=255)                                                                    gCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTgg                                                                                                                         <  2:351411/108‑1 (MQ=255)                                                                    gCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTgg                                                                                                                         >  1:351411/1‑108 (MQ=255)                                                                     cAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGcc                                                                               >  3:195183/1‑149 (MQ=255)                                                                         gCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCcgcg                                                                           >  5:309077/1‑149 (MQ=255)                                                                               caccaGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTa                                                                     >  4:282947/1‑149 (MQ=255)                                                                                accaGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTAc                                                                    <  2:217848/149‑1 (MQ=255)                                                                                          ggggCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTACCGCTACCAGt                                                          <  5:263959/149‑1 (MQ=255)                                                                                             gcgcGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTACCGCTACCAGTTgg                                                       <  3:356510/149‑1 (MQ=255)                                                                                                   ccTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGtcgggcagcgagcaggtcgcgcccccagcactggtggcgagccttgccacccaggcggcccatgatggtcggcacgatgtcgacctgggtacccacggtg                                                 <  2:196271‑M2/149‑101 (MQ=255)                                                                                                       gatgtcctgcccGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGtcgggcaggttgagcaggtcgcgcccccagcactggtggcgagccttgccacccaggcggcccatgatggtcggcacgatgtcgacctgggtacccacggtgtg                                             >  3:10074‑M2/6‑45 (MQ=255)                                                                                                           aCCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGCTTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTACCGCTACCAGTTGGGCAGCGAGTTCAAg                                         <  4:242555/149‑1 (MQ=255)                                                                                                            ccTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGtcgggcaggttgagcaggtcgcgcccccagcactggtggcgagccttgccacccaggcggcccatgatggtcggcacgatgtcgacctgggtacccacggtgtgattca                                        <  6:356552‑M2/149‑110 (MQ=255)                                                                                                             cTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGtcgggcaggttgagcaggtcgcgcccccagcactggtggcgagccttgccacccaggcggcccatgatggtcggcacgatgtcgacctgggtacccacggtgtgattcaa                                       <  7:150814‑M2/149‑111 (MQ=255)                                                                                                             cTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGtcgggcaggttgagcaggtcgcgcccccagcactggtggcgagccttgccacccaggcggcccatgatggtcggcacgatgtcgacctgggtacccacggtgtg                                             <  4:10074‑M2/143‑105 (MQ=255)                                                                                                                cccGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTACCGCTACCAGTTGGGAAGCGAGTTCAAGGCCg                                     >  7:316122/1‑148 (MQ=255)                                                                                                                            cAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTACCGCTACCAGTTGGGCAGCGAGTTCAAGGCCGAACTGATCGAAAg                        >  8:160384/1‑149 (MQ=255)                                                                                                                            cAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTACCGCTACCAGTTGGGCAGCGAGTTCAAGGCCGAACTGATCGAAAg                        >  7:55632/1‑149 (MQ=255)                                                                                                                            cAGGGCGTAGGCATGATCAAGCCGTAGCGCAGCGAGCAGATTGTCGGGCTGGTGCACGGTGACCGTATCCTGATCGAGTCCAACGACATGAGCCCGCGGATGTACCGCTACCAGTTGGGCAGCGAGTTCAAGGCCGAACTGATCGAAAg                        >  8:213759/1‑149 (MQ=255)                                                                                                                              gggCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTACCGCTAcc                                                             >  6:235202/1‑110 (MQ=255)                                                                                                                              gggCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTACCGCTAcc                                                             <  5:235202/110‑1 (MQ=255)                                                                                                                              gggCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTACCGCTACCAGTTGGGCAGCGAGTTCAAg                                         >  7:143718/1‑130 (MQ=255)                                                                                                                              gggCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTACCGCTACCAGTTGGGCAGCGAGTTCAAg                                         <  8:143718/130‑1 (MQ=255)                                                                                                                                       cATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTACCGCTACCAGTTGGGCAGCGAGTTCAAGGCCGAACTGATCGAAAGCCCGGACCAGc             >  6:130724/1‑149 (MQ=255)                                                                                                                                        aTGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTACCGCTACCAGTTGGGCAGCGAGTTCAAGGCCGAACTGATCGAAAGCCCGGACCAGcc            >  6:1328/1‑149 (MQ=255)                                                                                                                                        aTGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTACCGCTACCAGTTGGGCAGCGAGTTCAAGGCCGAACTGATCGAAAGCCCGGACCAGcc            >  8:19061/1‑149 (MQ=255)                                                                                                                                        aTGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTACCGCTACCAGTTGGGCAGCGAGTTCAAGGCCGAACTGATCGAAAGCCCGGACCAGcc            >  2:272963/1‑149 (MQ=255)                                                                                                                                           aTCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTACCGCTACCAGTTGGGCAGCGAGTTCAAGGCCGAACTGATCGAAAGCCCGGACCAGCCgg          >  1:122442/1‑148 (MQ=255)                                                                                                                                              aaGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTACCGCTACCAGTTGGGCAGCGAGTTCAAGGCCGAACTGATCGAAAGCCCGGACCAGCCGGaaa       <  5:130724/148‑1 (MQ=255)                                                                                                                                              aaGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTACCGCTACCAGTTGGGCAGCGAGTTCAAGGCCGAACTGATCGAAAGCCCGGACCAGCCGGAAAt      >  8:134527/1‑149 (MQ=255)                                                                                                                                              aaGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTACCGCTACCAGTTGGGCAGCGAGTTCAAGGCCGAACTGATCGAAAGCCCGGACCAGCCGGAAAt      >  8:145854/1‑149 (MQ=255)                                                                                                                                                gCCGtcgggcaggttgagcaggtcgcgcccccagcactggtggcgagccttgccacccaggcggcccatgatggtcggcacgatgtcgacctgggtacccacggtgtgattcaccgcaccgaacttctcctgaatgcccggggcaatca    >  5:356552‑M2/1‑4 (MQ=255)                                                                                                                                                gCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTACCGCTACCAGTTGGGCAGCGAGTTCAAGGCCGAACTGATCGAAAGCCCGGACCAGCCGGAAATGc    >  6:216581/1‑149 (MQ=255)                                                                                                                                                  cGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTACCGCTACCAGTTGGGCAGCGAGTTCAAGGCCGAACTGATCGAAAGCCCGGACCAGCCGGAAATGCTc  <  1:272963/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GGTGCGGTGAATCACACCGTGGGTACCCAGGTCGACATCGTGCCGACCATCATGGGCCGCCTGGGTGGCAAGGCTCGCCACCAGTGCTGGGGGCGCGACCTGCTCAACCTGCCCGAGGGTGACCAGGGCGTAGGCATGATCAAGCCGTCGGGCAGCGAGCAGATTGTCGGGCTGGTGCAGGGTGACCGTATCCTGATCGAGTCCAAGGACATGAGCCCGCGGATGTACCGCTACCAGTTGGGCAGCGAGTTCAAGGCCGAACTGATCGAAAGCCCGGACCAGCCGGAAATGCTC  >  NC_002947/2062766‑2063059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.