New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2145216	54 (0.950)	5 (0.090)	5/254	NT	9.5%	coding (334/765 nt)	kdsB	3‑deoxy‑manno‑octulosonate cytidylyltransferase
	?	NC_002947	= 2145271	42 (0.760)					coding (389/765 nt)	kdsB	3‑deoxy‑manno‑octulosonate cytidylyltransferase

GCCTTCGGTGCTGAAGTGATGATGACCCGTGCCGATCATGAATCGGGCACTGACCGCCTGGCCGAAGTGGCCGCGTACCTAGGGTTGCCGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2145066‑2145216 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgGCCAGGGTGGCGATACCGGCTTCCGGATGCGCAGCCAGGTTGGCCGCCACCTGGTCGATGATCACCGGCGGGATCAGCGGCTCGTCGCCCTGCACGTTGACCACAATGGCGTCAGCCGGCAACCCTAGGTA  <  NC_002947/2145271‑2145141                                                                                                                                                                                                                                                                                            GCCTTCGGTGCTGAAGTGATGATGACCCGTGCCGATCATGAATCGGGCACTGACCGCCTGGCCGAAGTGGCCGCGTACCTAGGGTTGCCGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCAT                                                                                                                                       >  6:355647/1‑149   CTTCGGTGCTGAAGTGATGATGACCCGTGCCGATCATGAATCGGGCACTGACCGCCTGGCCGAAGTGGCCGCGTACCTAGGGTTGCCGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATC                                                                                                                                      >  3:338343/1‑148                                                    GACCGCCTGGCCGAAGTGGCCGCGTACCAAGGGTTGCCGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCA‑GGTGGCGATACCGGCTTCCGGATGCGCAGCCAGGTTGGCCGCCAC                                                                                   >  5:205233/1‑149                                                     ACCGCCTGGCCGAAGTGGCCGCGTACCAAGGGTTGCCGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCA‑GGTGGCGATACCGGCTTCCGGATGCGCAGCCAGGTTGGCCGCCAC                                                                                   <  6:205233/148‑1                                                               CGAAGTGGCCGCGTACCTAGGGTTGCCGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGGCCAGGGTGGCGATACCGGCTTCCGGATGCGCAGCCAGGTTGGCCGCCACCTGGTCGATG                                                                         <  6:47121/149‑1                                                                                TAGGGTTGCCGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGGCCAGGGTGGCGATACCGGCTTCCGGATGCGCAGCCAGGTTGGCCGCCACCTGGTCGATGATC                                                                      <  1:241524/135‑1                                                                                TAGGGTTGCCGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGGCCAGGGTGGCGATACCGGCTTCCGGATGCGCAGCCAGGTTGGCCGCCACCTGGTCGATGATC                                                                      >  2:241524/1‑135                                                                                                                                                     TCGGCCAGGGTGGCGATACCGGCTTCCTGATGCGCAGCCAGGTTGGCCGCCACCTGGTCGATGATCACCGGCGGGATCAGCGGCTCGTCGCCCTGCACGTTGACCACAATGGCGTCAGCCGGCAACCCTAGGTA  <  6:341884/134‑1                                                                                                                                                     TCGGCCAGGGTGGCGATACCGGCTTCCGGATGCGCAGCCAGGTTGGCCGCCACCTGGTCGATGATCACCGGCGGGATCAGCGGCTCGTCGCCCTGCACGTTGACCACAATGGCGTCAGCCGGCAACCCTAGGTA  >  5:341884/1‑134                                                                                                                                                                                                                                                                                            GCCTTCGGTGCTGAAGTGATGATGACCCGTGCCGATCATGAATCGGGCACTGACCGCCTGGCCGAAGTGGCCGCGTACCTAGGGTTGCCGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2145066‑2145216 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgGCCAGGGTGGCGATACCGGCTTCCGGATGCGCAGCCAGGTTGGCCGCCACCTGGTCGATGATCACCGGCGGGATCAGCGGCTCGTCGCCCTGCACGTTGACCACAATGGCGTCAGCCGGCAACCCTAGGTA  <  NC_002947/2145271‑2145141

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.