New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2145216	54 (0.950)	5 (0.090)	5/254	NT	9.5%	coding (334/765 nt)	kdsB	3‑deoxy‑manno‑octulosonate cytidylyltransferase
	?	NC_002947	= 2145271	42 (0.760)					coding (389/765 nt)	kdsB	3‑deoxy‑manno‑octulosonate cytidylyltransferase

CGAAGTGGCCGCGTACCTAGGGTTGCCGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGGTGAGTGACAAGAACGGCCTGGCCCTGACGTTCAGCCGAGCGCCGCTGCCCTGGGCCCGCGATACCTTTGCCAAGGCCCGC  >  NC_002947/2145128‑2145404                                                                                                                                                |                                                                                                                                      cGAAGTGGCCGCGTACCTAGGGTTGCCGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGgccgagc                                                                                                                                  <  5:37296/149‑1 (MQ=255)        gCCGCGTACCTAGGGTTGCCGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGACGATCCa                                                                                                                           >  7:203351/1‑149 (MQ=255)            cgTACCTAGGGTTGCCGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAg                                                                                                                       >  7:271763/1‑149 (MQ=255)              tACCTAGGGTTGCCGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCcga                                                                                                                                    >  5:341884‑M2/1‑131 (MQ=255)              tACCTAGGGTTGCCGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCAGGAAGCCGGTATCGCCACCCTGGCcga                                                                                                                                    <  6:341884‑M2/134‑4 (MQ=255)                 cTAGGGTTGCCGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCgg                                                                                                                   >  1:163700/1‑148 (MQ=255)                 cTAGGGTTGCCGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCgg                                                                                                                   >  7:137458/1‑148 (MQ=255)                     ggTTGCCGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAAcc                                                                                                              >  7:243687/1‑149 (MQ=255)                        tGCCGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGGGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCTCCCTGGCCGAGCCGATCCATGAGCCGGAAACCgtg                                                                                                           <  8:236626/149‑1 (MQ=255)                         tccGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCgtg                                                                                                           <  6:164675/147‑1 (MQ=255)                          ccGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATGGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCgtgt                                                                                                          <  7:117802/148‑1 (MQ=255)                          ccGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCgtgt                                                                                                          <  4:338343/148‑1 (MQ=255)                             gCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCaa                                                                                                      <  8:271763/149‑1 (MQ=255)                                 aCGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAAccc                                                                                                   <  6:178781/148‑1 (MQ=255)                                  cGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCg                                                                                                  >  5:329334/1‑148 (MQ=255)                                      aTTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAAcgc                                                                                             >  1:77061/1‑149 (MQ=255)                                            gTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGa                                                                                                                  <  4:204630/122‑1 (MQ=255)                                             tCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAg                                                                                      <  8:89262/149‑1 (MQ=255)                                                 cGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAggtgg                                                                                  <  8:243687/149‑1 (MQ=255)                                                  gTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGgccgagc                                                                                                                                  <  3:342130/100‑1 (MQ=255)                                                  gTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGgccgagc                                                                                                                                  >  4:342130/1‑100 (MQ=255)                                                  gTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAggtggt                                                                                 <  5:117526/149‑1 (MQ=255)                                                   tGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAggtggt                                                                                 >  6:304927/1‑148 (MQ=255)                                                     cAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGgtgag                                                                              >  1:97442/1‑149 (MQ=255)                                                      aGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGgtgagt                                                                             <  7:1953/149‑1 (MQ=255)                                                      aGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGgtgagt                                                                             <  2:163700/149‑1 (MQ=255)                                                       gggCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGCCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGgtgagt                                                                             >  5:80237/1‑148 (MQ=255)                                                         gCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTTCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGGTGAGTGAc                                                                          <  8:310806/149‑1 (MQ=255)                                                            acgaGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGGTGAGTGACAAg                                                                       <  8:137458/149‑1 (MQ=255)                                                               aGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGGTGAGTGACAAGAAc                                                                    <  2:37178/149‑1 (MQ=255)                                                                    cTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGGTGAGTGACAAGAACGGCCt                                                               >  1:226966/1‑149 (MQ=255)                                                                          ccgccgGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGGTGAGTGACAAGAACGGCCTGGCCCt                                                         >  2:14885/1‑149 (MQ=255)                                                                             ccgGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGGTGAGTGACAAGAACGGCCTGGCCCTGAc                                                      <  2:77061/149‑1 (MQ=255)                                                                               ggTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGGTGAGTGACAAGAACGGCCTGGCCCTGACGt                                                    <  6:329334/149‑1 (MQ=255)                                                                                  gATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCcgatgatcaccggcgggatcagcggctcgtcgccctgcacgttgaccacaatggcgtcagccggcaacccta                                                               >  2:241524‑M2/1‑63 (MQ=255)                                                                                  gATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCcgatgatcaccggcgggatcagcggctcgtcgccctgcacgttgaccacaatggcgtcagccggcaacccta                                                               <  1:241524‑M2/135‑73 (MQ=255)                                                                                  gATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGGTGAGTGACAAGAACGGCCTGGCCCTGACGtt                                                   >  7:321363/1‑147 (MQ=255)                                                                                    tcatcGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGGTGAGTGACAAGAACGGCCTGGCCCTGACGTTCAGc                                               <  8:203351/149‑1 (MQ=255)                                                                                     catcGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCcgatgatcaccggcgggatcagcggctcgtcgccctgcacgttgaccacaatggcgtcagccggcaaccctaggtacgcggccacttcg                                              <  6:47121‑M2/149‑90 (MQ=255)                                                                                          aCCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCgtgt                                                                                                          <  8:105819/84‑1 (MQ=255)                                                                                          aCCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGGTGAGTGACAAGAACGGCCTGGCCCTGACGTTCAGCCGAgcg                                         >  1:55264/1‑149 (MQ=255)                                                                                               gTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACC‑TGGTcgatgatcaccggcgggatcagcggctcgtcgccctgcacgttgaccacaatggcgtcagccggcaacccttggtacgcggccacttcggccaggcggtc                                   >  5:205233‑M2/1‑49 (MQ=255)                                                                                               gTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACC‑TGGTcgatgatcaccggcgggatcagcggctcgtcgccctgcacgttgaccacaatggcgtcagccggcaacccttggtacgcggccacttcggccaggcggt                                    <  6:205233‑M2/148‑100 (MQ=255)                                                                                                    ggcCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGGTGAGTGACAAGAACGGCCTGGCCCTGAc                                                      >  7:87895/1‑126 (MQ=255)                                                                                                    ggcCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGGTGAGTGACAAGAACGGCCTGGCCCTGAc                                                      <  8:87895/126‑1 (MQ=255)                                                                                                           cTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGGTGAGTGACAAGAACGGCCTGGCCCTGACGTACAGCCGAGCGCCGCTGCCCTGGGCCcg                        <  1:14885/149‑1 (MQ=255)                                                                                                            tgtcTGCGCATCCGGAATCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAAc                                                                                                     <  7:205991/68‑1 (MQ=255)                                                                                                                     aTCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTGCAACCCGAACGCGGTCAAGGTGGTGAGTGACAAGAACGGCCTGGCCCTGACGTTCAGCCGAGCGCCGCTGCCCTGGGCCCGCGATACCttt              <  5:355647/149‑1 (MQ=255)                                                                                                                       ccGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGGTGAGTGACAAGAACGGCCTGGCCCTGACGTTCAGCCGAGCGCCGCTGCCCTGGGCCCGCGATACCTTTGc            >  3:174125/1‑149 (MQ=255)                                                                                                                           aaGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGGTGAGTGACAAGACCGGCCTGGCCCTGACGTTCAGCCGAGCGCCGCTGCCCTGGGCCCGCGATACCTTTGCCAAg        <  6:80237/149‑1 (MQ=255)                                                                                                                           aaGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGGTGAGTGACAAGAACGGCCTGGCCCTGACGTTCAGCCGAGCGCCGCTGCCCTGGGCCCGCGATACCTTTGCCAAg        <  2:226966/149‑1 (MQ=255)                                                                                                                                 gTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGGTGAGTGACAAGAACGGCCTGGCCCTGACGTTCAGCCGAGCGCCGCTGCCCTGGGCCCGCGATACCTTTGCCAAGGCCcgc  <  2:55264/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                      CGAAGTGGCCGCGTACCTAGGGTTGCCGGCTGACGCCATTGTGGTCAACGTGCAGGGCGACGAGCCGCTGATCCCGCCGGTGATCATCGACCAGGTGGCGGCCAACCTGGCTGCGCATCCGGAAGCCGGTATCGCCACCCTGGCCGAGCCGATCCATGAGCCGGAAACCGTGTTCAACCCGAACGCGGTCAAGGTGGTGAGTGACAAGAACGGCCTGGCCCTGACGTTCAGCCGAGCGCCGCTGCCCTGGGCCCGCGATACCTTTGCCAAGGCCCGC  >  NC_002947/2145128‑2145404

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.