New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2453996 =	86 (1.520)	5 (0.090)	5/248	NT	5.6%	coding (1123/3450 nt)	mfd	transcription‑repair coupling factor
	?	NC_002947	2454041 =	88 (1.630)					coding (1078/3450 nt)	mfd	transcription‑repair coupling factor

AAGATTGCTTCGCCCGGCTCAAGCAGTGGCCCCGGGTGGTGGTCAGCAGCGAAGAGCTGGAGCCTGGCGTGGGCCGCGAGCGCTTCCCGGCGCGCGCCCTGCCCAACCTGGCCATCGAGGCCAAGGCCAACCAGCCGCTGGCCGAGCTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2454148‑2453996 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccaGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCC  >  NC_002947/2454041‑2454187                                                                                                                                                                                                                                                                                                              AAGATTGCTTCGCCCGGCTCAAGCAGTGGCCCCGGGTGGTGGTCAGCAGCGAAGAGCTGGAGCCTGGCGTGGGCCGCGAGCGCTTCCCGGCGCGCGCCCTGCCCAACCTGGCCATCGAGGCCAAGGCCAACCAGCCGCTGGCCGAGCTG                                                                                                                                                         <  2:281240/149‑1  AGATTGCTTCGCCCGGCTCAAGCAGTGGCCCCGGGTGGTGGTCAGCAGCGAAGAGCTGGAGCCTGGCGTGGGCCGCGAGCGCTTCCCGGCGCGCGCCCTGCCCAACCTGGCCATCGAGGCCAAGGCCAACCAGCCGCTGGCCGAGCTGG                                                                                                                                                        <  5:105851/149‑1     TTGCTTCGCCCGGCTCAAGCAGTGGCCCCGGGTGGTGGTCAGCAGCGAAGAGCTGGAGCCTGGCGTGGGCCGCGAGCGCTTCCCGGCGCGCGCCCTGCCCAACCTGGCCATCGAGGCCAAGGCCAACCAGCCGCTGGCCGAGCTGGCCA                                                                                                                                                     <  7:79496/149‑1                                                                                                            CTGGCCATCGAGGCCAAGGCCAACCAGCCGCTGGCCGAGCTGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCT                                                              <  5:15243/133‑1                                                                                                            CTGGCCATCGAGGCCAAGGCCAACCAGCCGCTGGCCGAGCTGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCT                                                              >  6:15243/1‑133                                                                                                             TGGCCATCGAGGCCAAGGCCAACCAGCCGCTGGACGAGCTGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCAGGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAA                                             >  3:191401/1‑149                                                                                                              GGCCATCGAGGCCAAGGCCAACCAGCCGCTGGCCGAGCTGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCCCTGCTTGAGCCGGGCGAAGagat                                            >  7:71067/1‑145                                                                                                              GGCCATCGAGGCCAAGGCCAACCAGCCGCTGGCCGAGCTGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCGCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAA                                                 <  8:71067/144‑1                                                                                                                                                    TGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGC      <  5:39964/149‑1                                                                                                                                                       CCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACAGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGC   >  6:79433/1‑149                                                                                                                                                        CAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCCCCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCC  >  6:175947/1‑149                                                                                                                                                        CAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCC  <  2:332294/149‑1                                                                                                                                                        CAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCACGGCCGGCGGCAACACAGGCC  >  4:254696/1‑149                                                                                                                                                        CAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGG                                  >  1:213064/1‑117                                                                                                                                                        CAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGG                                  <  2:213064/117‑1                                                                                                                                                                                                                                                                                                              AAGATTGCTTCGCCCGGCTCAAGCAGTGGCCCCGGGTGGTGGTCAGCAGCGAAGAGCTGGAGCCTGGCGTGGGCCGCGAGCGCTTCCCGGCGCGCGCCCTGCCCAACCTGGCCATCGAGGCCAAGGCCAACCAGCCGCTGGCCGAGCTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2454148‑2453996 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccaGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCTCGGCCGGCGGCAACAGCGGCC  >  NC_002947/2454041‑2454187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.