| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3658098 = | 52 (0.920) | 8 (0.150) | 7/246 | NT | 14.3% | coding (152/951 nt) | PP_3222 | ABC transporter permease |
| ? | NC_002947 | 3658157 = | 47 (0.880) | coding (93/951 nt) | PP_3222 | ABC transporter permease | |||||
TCTACCTGCTGCCCGGCGACACCTTGGCGATCATGCTGAGCGCCTCCGGCATGGAAGCCGACGGCCTGTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3658170‑3658098‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcgccGGGCAGCAGGTAGAGGATGAAGTAGGTGATGGTATAAGCCCCCCACAACACCAGCAGGGCCTGGCCGACGCGGCCGATCAGGTAGCGTCTCATGGCTGGCCGACCTGGATGTCACTGAGCAGGGCGAAGCCTTCGGCGGTCCAGTGG > NC_002947/3658157‑3658303 TCTACCTGCTGCCCGGCGACACCTTGGCGATCATGCTGAGCGCCTCCGGCATGGAAGCCGACGGCCTGTCGCCGGGCAGCAGGTAGAGGATGAAGTAGGTGATGGTATAAGCCCCCCACAACACCAGCAGGGCCTGGCCGACGCGGCC > 5:17068/1‑148 CCCGGCGACACCTTGGCGATCATGCTGAGCGCCTCCGGCATGGAAGCCGACGGCCTGTCGCCGGGCAGCAGGTAGAGGATGAAGTAGGTGATGGTATAAGCCCCCCACAACACCAGCAGGGCCTGGCCGACGCGGCCGATCAGGTAGCG > 6:27478/1‑149 CCGGCGACACCTTGGCGATCATGCTGAGCGCCTCCGGCATGGAAGCCGACGGCCTGTCGCCGGGCAGAAGGTAGAGGATGAAGTAGGTGATGGTATAAGCCCCACACCACAAGAGCAGGGCCTGGCCGACGCGGCCGATCACGTCGCGT > 8:154184/1‑149 CGGCGACACCTTGGCGATCATGCTGAGCGCCTCCGGCATGGAAGCCGACGGCCTGTCGCCGGGCAGCAGGTAGAGGATGAAGTAGGTGATGGTATAAGCCCCCCACAACACCAGCAGGGCCTGGCCGACGCGGCCGATCAGGTAGCGTC > 2:163868/1‑149 CGGCGACACCTTGGCGATCATGCTGAGCGCCTCCGGCATGGAAGCCGACGGCCTGTCGCCGGGCAGCAGGTAGAGGATGAAGTAGGTGATGGTATAAGCCCCCCACAACACCAGCAGGGCCTGGCCGACGCGGCCGATCAGGTAGCGTC > 8:224932/1‑149 GACACCTTGGCGATCATGCTGAGCGCCTCCGGCATGGAAGCCGACGGCCTGTCGCCGGGCAGCAGGTAGAGGATGAAGTAGGTGATGGTATAAGCCCCCCACAACACCAGCAGGGCCTGGCCGACGCGGCCGATCAGGTAGCGTCTCAT < 1:163868/149‑1 CCTTGGCGATCATGCTGAGCGCCTCCGGCATGGAAGCCGACGGCCTGTCGCCGGGCAGCAGGTAGAGGATGAAGTAGGTGATGGTATAAGCCCCCCACAACACCAGCAGGGCCTGGCCGACGCGGCCGATCAGGTAGCGTCTCATGGCT < 6:17068/149‑1 AAGGCGACGGCCTGTCGCCGGGCAGCAGGTAGAGGATGAAGTAGGTGATGGTATAAGCCCCCCACAACACCAGCAGGGCCTGGCCGACGCGGCCGATCAGGTAGCGTCTCATGGCTGGCCGACCTGGATGTCACTGAGCAGGGCGAAGC < 5:27478/149‑1 CCGGGCAGCAGGTAGAGGATGAAGTAGGTGATGGTATAAGCCCCCCACAACACCAGCAGGGCCTGGCCGACGCGGCCGATCAGGTAGCGTCTCATGGCTGGCCGACCTGGATGTCACTGAGCAGGGCGAAGCCTTCGGCGGTCCAGTGG < 6:118755/149‑1 TCTACCTGCTGCCCGGCGACACCTTGGCGATCATGCTGAGCGCCTCCGGCATGGAAGCCGACGGCCTGTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3658170‑3658098‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcgccGGGCAGCAGGTAGAGGATGAAGTAGGTGATGGTATAAGCCCCCCACAACACCAGCAGGGCCTGGCCGACGCGGCCGATCAGGTAGCGTCTCATGGCTGGCCGACCTGGATGTCACTGAGCAGGGCGAAGCCTTCGGCGGTCCAGTGG > NC_002947/3658157‑3658303 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |