New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3990976	49 (0.860)	5 (0.090)	5/246	NT	12.6%	coding (651/894 nt)	PP_3517	hypothetical protein
	?	NC_002947	= 3991042	23 (0.430)					coding (585/894 nt)	PP_3517	hypothetical protein

GTCTTTCTCGAACACTTGGCCGTCATGGCTGATCATGAAGCTCATCACCCCGGTGTCGTCGTACTTGGCCGGCCAGGCGACCATGGCGAAGCCACGGCTCATCTGGTTGCCGATCAGGTAGCTGTAGG‑CACCGCCCGGGGCGGATGGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3990826‑3990976 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggcccGCTGTTCGGCCAGGATGTGGTCGGTGACGCCTGGTATGGCTACCACTTCCGCATCCTGGATGCACAGGGCCCATCCGCCCCGGGCGGTGCCTACAGCTACCTGATCGGCAACCAGATGAGCCGTGGCTTCGCCATGGTCGCCTGGCCG  <  NC_002947/3991042‑3990895                                                                                                                                                                                                                                                                                                              GTCTTTCTCGAACACTTGGCCGTCATGGCTGATCATGAAGCTCATCACCCCGGTGTCGTCGTACTTGGCCGGCCAGGCGACCATGGCGAAGCCACGGCTCATCTGGTTGCCGATCAGGTAGCTGTAGG‑CACCGCCCGGGGCGGATGGGC                                                                                                                                                        <  1:259153/149‑1                                                             GTACTTGGCCGGCCAGGCGACCATGGCGAAGCCACGGCTCATCTGGTTGCCGATCAGGTAGCTGTAGG‑CACCGCCCGGGGCGGATGGGCC‑‑CTGTGCATCCAGGATGTGGTCGGTGACGCCTGGTATGGCTACCACTTCCGCATCCTGG                                                                                           <  2:49944/148‑1                                                                         CCAGGCGACCATGGCGAAGCCACGGCTCATCTGGTTGCCGATCAGGTAGCTGTAGG‑CACCGCCCGGGGCGGATGG                                                                                                                                                          >  7:71541/1‑75                                                                         CCAGGCGACCATGGCGAAGCCACGGCTCATCTGGTTGCCGATCAGGTAGCTGTAGG‑CACCGCCCGGGGCGGATGG                                                                                                                                                          <  8:71541/75‑1                                                                                tctATGGCGAAGCCACGGCTCATCTGGTTGCCGATCAGGTAGCTGTAGG‑CACCGCCCGGGGCGGATGGGCCCGCTGTTCGGCCAGGATGTGGTCGGTGACGCCTGGTATGGCTACCACTTCCGCATCCTGGATGCACAGGGCCCATCC                                                                          <  2:74596/145‑1                                                                                    TGGCGAAGCCACGGCTCATCTGGTTGCCGATCAGGTAGCTGTAGGACACCGCCCGGGGCGGATGGGCCCGCTGTTCGGCCAGGATGTGGTCGGTGACGCCTGGTATGGCTACCACTTCCGCATCCTGGATGCACAGGGCCCATCC                                                                          >  1:74596/1‑145                                                                                        GAAGCCACGGCTCATCTGGTTGCCGATCAGGTAGCTGTAGG‑CACCGCCCGGGGCGGATGGGCCCGCTGTTCGGCCAGGATGTGGTCGGTGACGCCTGGTATGGCTACCACTTCCGCATCCTGGATGCACAGGGCCCATC                                                                           <  1:266215/139‑1                                                                                        GAAGCCACGGCTCATCTGGTTGCCGATCAGGTAGCTGTAGG‑CACCGCCCGGGGCGGATGGGCCCGCTGTTCGGCCAGGATGTGGTCGGTGACGCCTGGTATGGCTACCACTTCCGCATCCTGGATGCACAGGGCCCATC                                                                           >  2:266215/1‑139                                                                                                                                                   GGGCCCGCTGTTCGGCCAGGATGTGGTCGGTGACGCCTGGTATGGCTACCACTTCCGCATCCTGGATGCACAGGGCCCATCCGCCCCGGGCGGTGCCTACAGCTACCTGATCGGCAACCAGATGAGCCGTGGCTTCGCCATGGTCGCC        <  5:345479/148‑1                                                                                                                                                    GGCCCGCTGTTCGGCCAGGATGTGGTCGGTGACGCCTGGTATGGCTACCACTTCCGCATCCTGGATGCACAGGGCCCATCCGCCCCGGGCGGTGCCTACAGCTACCTGATCGGCAACCAGATGAGCCGTGGCTTCGCCATGGTCGCCTG      >  2:122286/1‑149                                                                                                                                                    GGCCCGCTGTTCGGCCAGGATGTGGTCGGTGACGCCTGGTATGGCTACCACTTCCGCATCCTGGATGCACAGGGCCCATCCGCCCCGGGCGGTGCCTACAGCTACCTGATCGGCAACCAGATGAGCCGTGGCTTCGCCATGGTCGCCT       <  1:78741/148‑1                                                                                                                                                      CCCGCTGTTCGGCCAGGATGTGGTCGGTGACGCCTGGTATGGCTACCACTTCCGCATCCTGGATGCACAGGGCCCATCCGCCCCGGGCGGTGCCTACAGCTACCTGATCGGCAACCAGATGAGCCGTGGCTTCGCCATGGTCGCCTGGC    >  3:323593/1‑149                                                                                                                                                        CGCTGTTCGGCCAGGATGTGGTCGGTGACGCCTGGTATGGCTACCACTTCCGCATCCTGGATGCACAGGGCCCATCCGCCCCGGGCGGTGCCTACAGCTACCTGATCGGCAACCAGATGAGCCGTGGCTTCGCCATGGTCGCCTGGCCG  <  4:323593/149‑1                                                                                                                                                                                                                                                                                                              GTCTTTCTCGAACACTTGGCCGTCATGGCTGATCATGAAGCTCATCACCCCGGTGTCGTCGTACTTGGCCGGCCAGGCGACCATGGCGAAGCCACGGCTCATCTGGTTGCCGATCAGGTAGCTGTAGG‑CACCGCCCGGGGCGGATGGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3990826‑3990976 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggcccGCTGTTCGGCCAGGATGTGGTCGGTGACGCCTGGTATGGCTACCACTTCCGCATCCTGGATGCACAGGGCCCATCCGCCCCGGGCGGTGCCTACAGCTACCTGATCGGCAACCAGATGAGCCGTGGCTTCGCCATGGTCGCCTGGCCG  <  NC_002947/3991042‑3990895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.