New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3990976	49 (0.860)	5 (0.090)	5/246	NT	12.6%	coding (651/894 nt)	PP_3517	hypothetical protein
	?	NC_002947	= 3991042	23 (0.430)					coding (585/894 nt)	PP_3517	hypothetical protein

CGGCCAGGCGACCATGGCGAAGCCACGGCTCATCTGGTTGCCGATCAGGTAGCTGTAGGCACCGCCCGGGGCGGATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCGGGCCCAACGGGCTGACGTCACCGTCGCCATCGTCATCCCAATACAGCCCGTCATGCTTGCCCGGCTCGCTGAAAATCTTCTGTGCGTACTCCAGCGCACCATTGCCGTTATGGTCCTGGGTCGCGTAGTCCATTTGCGCATCGTGA  >  NC_002947/3990895‑3991189                                                                                                                                                     |                                                                                                                                                    cGGCCAGGCGACCATGGCGAAGCCACGGCTCATCTGGTTGCCGATCAGGTAGCTGTAGGCACCGCCCGGGGCGGATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCg                                                                                                                                                    <  4:323593‑M2/149‑2 (MQ=255)   gCCAGGCGACCATGGCGAAGCCACGGCTCATCTGGTTGCCGATCAGGTAGCTGTAGGCACCGCCCGGGGCGGATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCggg                                                                                                                                                  >  3:323593‑M2/1‑146 (MQ=255)     cAGGCGACCATGGCGAAGCCACGGCTCATCTGGTTGCCGATCAGGTAGCTGTAGGCACCGCCCGGGGCGGATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCgggcc                                                                                                                                                >  2:122286‑M2/1‑144 (MQ=255)      aGGCGACCATGGCGAAGCCACGGCTCATCTGGTTGCCGATCAGGTAGCTGTAGGCACCGCCCGGGGCGGATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCgggcc                                                                                                                                                <  1:78741‑M2/148‑6 (MQ=255)       ggCGACCATGGCGAAGCCACGGCTCATCTGGTTGCCGATCAGGTAGCTGTAGGCACCGCCCGGGGCGGATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCgggccc                                                                                                                                               <  5:345479‑M2/148‑7 (MQ=255)           aCCATGGCGAAGCCACGGCTCATCTGGTTGCCGATCAGGTAGCTGTAGGCACCGCCCGGGGCGGATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCGGGCCCAACgg                                                                                                                                          >  5:362368/1‑149 (MQ=255)             cATGGCGAAGCCACGGCTCATCTGGTTGCCGATCAGGTAGCTGTAGGCACCGCCCGGGGCGGATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCGGGCCCAACGGGc                                                                                                                                        >  1:56093/1‑149 (MQ=255)                 gCGAAGCCACGGCTCATCTGGTTGCCGATCAGGTAGCTGTAGGCACCGCCCGGGGCGGATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCGGGCCCAACGGGCTGAc                                                                                                                                    <  8:220970/149‑1 (MQ=255)                            gCTCATCTGGTTGCCGATCAGGTAGCTGTAGGCACCGCCCGGGGCGGATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCATGCCCGA‑AAAGCGGGCCCAACGGGCTGACGTCACCGTCGc                                                                                                                         >  3:76882/1‑149 (MQ=255)                                aTCTGGTTGCCGATCAGGTAGCTGTAGGCACCGCCCGGGGCGGATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCGGGCCCAACGGGCTGACGTCACCGTCGCCATc                                                                                                                     >  2:41542/1‑149 (MQ=255)                                aTCTGGTTGCCGATCAGGTAGCTGTAGGCACCGCCCGGGGCGGATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCGGGCCCAACGGGCTGACGTCACCGTCGCCATc                                                                                                                     >  3:64125/1‑149 (MQ=255)                                    ggTTGCCGATCAGGTAGCTGTAGGCACCGCCCGGGGCGGATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCGGGCCCAACGGGCTGACGTCACCGTCGCCATCGTc                                                                                                                  <  6:345479/148‑1 (MQ=255)                                     gTTGCCGATCAGGTAGCTGTAGGCACCGCCCGGGGCGGATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCGGGCCCAACGGGCTGACGTCACCGTCGCCATCGTCa                                                                                                                 <  6:25381/148‑1 (MQ=255)                                      ttGCCGATCAGGTAGCTGTAGGCACCGCCCGGGGCAGATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCGGGCCCAACGGGCTGACGTCACCGTCGCCATCGTCATc                                                                                                               >  1:37992/1‑149 (MQ=255)                                         ccGATCAGGTAGCTGTAGGCACCGCCCGGGGCGGATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCGGGCCCAACGGGCTGACGTCACCGTCGCCATCGTCATccc                                                                                                             <  4:64125/148‑1 (MQ=255)                                           gATCAGGTAGCTGTAGGCACCGCCCGGGGCGGATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCGGGCCCAACGGGCTGACGTCACCGTCGCCATCGTCATCCCAAt                                                                                                          <  2:56093/149‑1 (MQ=255)                                            aTCAGGTAGCTGTAGGCACCGCCCGGGGCGGATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGCCCAGATCCTGGCCGA‑ACAGCGGGCCCACCGGGCTGACGTCGCCGTCGCCATCGTCATCCCACTa                                                                                                         >  6:226331/1‑149 (MQ=255)                                                    gCTGTAGGCACCGCCGGGGGCGGATTGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGAGCACATCCTGGCCGACACAGCGGGCCCAACGGGCTTACGTCACCGTCGCCATCGTCATCGCAATACAGccc                                                                                                   <  1:98528/148‑1 (MQ=255)                                                     cTGTAGGCACCGCCCGGGGCAGATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCGGGCCCAACGGGCTGACGTCACCGTCGCCATCGTCATCCCAATACAGCCCGTc                                                                                                <  2:37992/149‑1 (MQ=255)                                                        tAGGCACCGCCCGGGGCGGATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCGGGCCCAACGGGCTGACGTCACCGTCGCCATCGTCATCCCAATACAGCCCGTCATg                                                                                             <  5:226331/149‑1 (MQ=255)                                                                         ggATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCgggcccatccgccccgggcggtgtcctacagctacctgatcggcaaccagatgagccgtggcttcgcca                                                                                >  1:74596‑M2/1‑76 (MQ=255)                                                                         ggATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCgggcccatccgccccgggcggtgcctacagctacctgatcggcaaccagatgagccgtggcttcgccataga                                                                             <  2:74596‑M2/148‑73 (MQ=255)                                                                          gATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCgggcccatccgccccgggcggtgcctacagctacctgatcggcaaccagatgagccgtggcttc                                                                                     >  2:266215‑M2/1‑75 (MQ=255)                                                                          gATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCgggcccatccgccccgggcggtgcctacagctacctgatcggcaaccagatgagccgtggcttc                                                                                     <  1:266215‑M2/139‑65 (MQ=255)                                                                                cccTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCGGGCCCAACGGGCTGACGTCACCGTCGCCATCGTCATCCCAATACAGCCCGTCATGCTTGCCCGGCTCGCTGAAAAtctt                                                                     <  7:291190/149‑1 (MQ=255)                                                                                       cATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCGGGCCCAACGGGCTGACGTCACCGTCGCCATCGTCATCCCAATACAGCCCGTCATGCTTGCCCGGCTCGCTGAAAATCTTCTGTGCg                                                              <  6:362368/149‑1 (MQ=255)                                                                                         tCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCGGGCCCAACGGGCTGACGTCACCGTCGCCATCGTCATCCCAATACAGCCCGTCATGCTTGCCCGGCTCGCTGAAAATCTTCTGTGCGt                                                             >  8:269050/1‑148 (MQ=255)                                                                                          ccAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGATGC‑ACAGgcccatccgccccgggcggtgcctacagctacctgatcggcaaccagatgagccgtggcttcgccatggtcgcctggccggccaagtac                                                             <  2:49944‑M2/148‑90 (MQ=255)                                                                                          ccAGCATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCGCATCCTGGCCGA‑ACAGCGGGCCAAAAGTGCTGAAGAACCAGTCGCCATCGTCATGACAATACAGCCAGACATGGTAGACCGGCTCGCTGAAAATCTTCTGAGCGtc                                                            >  4:60124/1‑147 (MQ=255)                                                                                                           tAGCCATACCAGGCGTCACGGACCACATCCTGGCCGA‑ACAGCGTGCCCAACGGGCTGACGTCACCGTCGCCATCGTCATCCCAATACAGCCCGTCATGCTTGCCCGGCTCGCTGAAAATCTTCTGTGCGTACTCCAGCGCACCATTGcc                                          <  8:65406/149‑1 (MQ=255)                                                                                                               cATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCGGGCCCAACGGGCTGACGTCACCGTCGCCATCGTCATCCCAATACAGCCCGTCATGCTTGCCCGGCTCGCTGAAAATCTTCTGTGCGTACTCCAGCGCACCATTGCCGTTa                                      >  4:104826/1‑149 (MQ=255)                                                                                                                        agTCACCGACCACATCCTGGCCGA‑ACAGCGGGCCCAACGGGCTGACGTCACCGTCGCCATCGTCATCCCAATACAGCCCGTCATGCTTGCCCGGCTCGCTGAAAATCTTCTGTGCGTACTCCAGCGCACCATTGCCGTTATGGTCCTgg                             <  2:156294/148‑1 (MQ=255)                                                                                                                                        cTGGCCGA‑ACAGCGGGCCCAACGGGCTGACGTCACCGTCGCCATCGTCATCCCAATACAGCCCGTCATGCTTGCCCGGCTCGCTGAAAATCTTCTGTGCGTACTCCAGCGCACCATTGCCGTTATGGTCCTGGGTCGCGTAGTCCAttt             >  6:236071/1‑149 (MQ=255)                                                                                                                                        cTGGCCGA‑ACAGCGGGCCCAACGGGCTGACGTCACCGTCGCCATCGTCATCCCAATACAGCCCGTCATGCTTGCCCGGCTCGCTGAAAATCTTCTGTGCGTACTCCAGCGCACCATTGCCGTTATGGTCCTGGGTCGCGTAGTCCAttt             <  5:236071/149‑1 (MQ=255)                                                                                                                                                 aCAGCGGGCCGAACGGGCTGACGTCACAGTCGCCTTCGTCATACCAATACAGCCCGTAATGCTTGCCCGGCTCGCTGAAAATCTTCTGTGCTTAATCCAGCGCACCATTGCCTTTTTGGTCCTGGGTCGCGTGGTCCATTTGCGCAt       <  3:60124/147‑1 (MQ=255)                                                                                                                                                  cAGCGGGCCCAACGGGCTGACGTCACCGTCGCCATCGTCATCCCAATACAGCCCGTCATGCTTGCCCGGCTCGCTGAAAATCTTCTGTGCGTACTCCAGCGCACCATTGCCGTTATGGTCCTGGGTCGCGTAGTCCATTTGCGCATCGt    <  4:76882/149‑1 (MQ=255)                                                                                                                                                     cGGGCCCAACGGGCTGACGTCACCGTCGCCATCGTCATCCCAATACAGCCCGTCATGCTTGCCCGGCTCGCTGAAAATCTTCTGTGCGTACTCCAGCGCACCATTGCCGTTATGGTCCTGGGTCGCGTAGTCCATTTGCGCATCGTGa  >  6:177353/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CGGCCAGGCGACCATGGCGAAGCCACGGCTCATCTGGTTGCCGATCAGGTAGCTGTAGGCACCGCCCGGGGCGGATGGGCCCTGTGCATCCAGGATGCGGAAGTGGTAGCCATACCAGGCGTCACCGACCACATCCTGGCCGA‑ACAGCGGGCCCAACGGGCTGACGTCACCGTCGCCATCGTCATCCCAATACAGCCCGTCATGCTTGCCCGGCTCGCTGAAAATCTTCTGTGCGTACTCCAGCGCACCATTGCCGTTATGGTCCTGGGTCGCGTAGTCCATTTGCGCATCGTGA  >  NC_002947/3990895‑3991189

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.