New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4067421 =	52 (0.920)	3 (0.050)	3/252	NT	5.7%	coding (1643/3108 nt)	mdtC	multidrug transporter membrane protein
	?	NC_002947	4067453 =	48 (0.870)					coding (1611/3108 nt)	mdtC	multidrug transporter membrane protein

CCACCATCGGCATCAACATCGCCCTGTACGTGGTGGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4067460‑4067421 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccGATGGTGGCCAGCAGGCTGAGCAGGGTCAGCCGCTTGTGGCGCAGGGCCCAGCCCAGGCTGTGGTCATAGGCAGCAACCATGCGCTGATGCAGCGTGTCGCTCCAGCGCTGCAGGCGTGTCTGCTCGGCCTGTTGCGGCTTGAGC  >  NC_002947/4067453‑4067597                                                                                                                                                                                           CCACCATCGGCATCAACATCGCCCTGTACGTGGTGGTGCCGATGGTGGCCAGCAGGCTGAGCAGGGTCAGCCGCTTGTGGCGCAGGGCCCAGCCCAGGCTGTGGTCATAGGCAGCAACCATGCGCTGATGCAGCGTGTCGCTCCAGCGC                                      >  2:255952/1‑149    CCATCGGCATCAACATCGCCCTGTACGTGGTGGTGCCGATGGTGGCCAGCAGGCTGAGCAGGGTCAGCCGCTTGTGGCGCAGGGCCCAGCCCAGGCTGTGGTCATAGGCAGCAACCATGCGCTGATGCAGCGTGTCGCTCCAGCGCTG                                    >  7:21898/1‑148      ATCGGCATCAACATCGCCCTGTACGTGGTGGTGCCGATGGTGGCCAGCAGGCTGAGCAGGGTCAGCCGCTTGTGGCGCAGGGCCCAGCCCAGGCTGTGGTCATAGGCAGCAACCATGCGCTGATGCAGCGTGTCGCTCCAGCGCTGCAG                                 <  1:255952/149‑1                                     TGCCGATGGTGGCCAGCAGGCTGAGCAGGGTCAGCCGCTTGTGGCGCAGGGCCCAGCCCAGGCTGTGGTCATAGGCAGCAACCATGCGCTGATGCAGCGTGTCGCTCCAGCGCTGCAGGCGTGTCTGCTCGGCCTGTTGCGGCTTGAGC  <  7:21542/149‑1                                      GCCGATGGTGGCCAGCAGGCTGAGCAGGGTCAGCCGCTTGTGGCGCAGGGCCCAGCCCAGGCTGTGGTCATAGGCAGCAACCATGCGCTGATGCAGCGTGTCGCTCCAGCGCTGCAGGCGTGTCTGCTCGGC                  <  7:315580/132‑1                                      GCCGATGGTGGCCAGCAGGCTGAGCAGGGTCAGCCGCTTGTGGCGCAGGGCCCAGCCCAGGCTGTGGTCATAGGCAGCAACCATGCGCTGATGCAGCGTGTCGCTCCAGCGCTGCAGGCGTGTCTGCTCGGC                  >  8:315580/1‑132                                       CCGATGGTGGCCAGCAGGCTGAGCAGGGTCAGCCGCTTGTGGCGCAGGGCCCAGCCCAGGCTGTGGTCATAGGCAGCAACCATGCGCTGATGCAGCGTGTCGCTCCAGCGCTGCAGGCGTGTCTGCTCGGCCTGTTGCGGCTTGA    <  3:139978/145‑1                                       CCGATGGTGGCCAGCAGGCTGAGCAGGGTCAGCCGCTTGTGGCGCAGGGCCCAGCCCAGGCTGTGGTCATAGGCAGCAACCATGCGCTGATGCAGCGTGTCGCTCCAGCGCTGCAGGCGTGTCTGCTCGGCCTGTTGCGGCTTGA    >  4:139978/1‑145                                                                                                                                                                                           CCACCATCGGCATCAACATCGCCCTGTACGTGGTGGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4067460‑4067421 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccGATGGTGGCCAGCAGGCTGAGCAGGGTCAGCCGCTTGTGGCGCAGGGCCCAGCCCAGGCTGTGGTCATAGGCAGCAACCATGCGCTGATGCAGCGTGTCGCTCCAGCGCTGCAGGCGTGTCTGCTCGGCCTGTTGCGGCTTGAGC  >  NC_002947/4067453‑4067597

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.