New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4267678	40 (0.710)	3 (0.060)	3/244	NT	6.6%	coding (180/1254 nt)	galP‑IV	porin‑like protein
	?	NC_002947	= 4267712	48 (0.900)					coding (146/1254 nt)	galP‑IV	porin‑like protein

GTGCACCGGCAACAGTTCTGAGCCGCTGGTACCGCCGCCGCTGTCCAGCTTCACGCCGAACAGGGCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCTGGGCCCACTCTTCAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4267528‑4267678 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcaaccGCGATTTCCGCGACCCGGGGGCCGCCAAGGGCAAGGTTGAAGAGTGGGCCCAGGGTTTCATCTTCAAGTTCAGCTCTGGCTACACCCCGGGGCTGATCGGTTTTGGCCTGGATGGTATCGCCCTGTTCGGCGTGAAGCTGGACAGCG  <  NC_002947/4267712‑4267566                                                                                                                                                                                                                                                                                                            GTGCACCGGCAACAGTTCTGAGCCGCTGGTACCGCCGCCGCTGTCCAGCTTCACGCCGAACAGGGCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCTGGGCCCACTCTTCAA                                                                                                                                                       <  4:25235/149‑1                                              CAGCTTCACGCCGAACAGGGCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCTGGGCCCACTCTTCAACCGCGATTTCCGCGACCCGGGGGCCGCCAAGGGCAAGGTTGAAGA                                                                                                          <  4:240090/149‑1                                                GCTTCACGCCGAACAGGGCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCTGGGCCCACTCTTCAACCGCGATTTCCGCGACCCGGGGGCCGCCAAGGGCAAGGTTGAAGAGT                                                                                                        >  2:12768/1‑149                                                    CACGCCGAACAGGGCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCTGGGCCCACTCTTCAACCGCGATTTCCGCGACCCGGGGGCCGCCAAGGGCAAGGTTGAAGAGTGG                                                                                                      <  1:12768/147‑1                                                                                                                                                CTTCAACCGCGATTTCCGCGACCCGGGGGCCGCCAAGGGCAAGGTTGAAGAGTGGGCCCAGGGTTTCATCTTCAAGTTCAGCTCTGGCTACACCCCGGGGCTGATCTGTTTTGGCCTGGATGGTATCGCCCTGTTCGGCGTGAAGCTG         >  8:64087/1‑148                                                                                                                                                CTTCAACCGCGATTTCCGCGACCCGGGGGCCGCCAAGGGCAAGGTTGAAGAGTGGGCCCAGGGTTTCATCTTCAAGTTCAGCTCTGGCTACACCCCGGGGCTGATCGGTTTTGGCCTGGATGGTATCGCCCTGTTCGGCGTGAAGCTG         <  7:177318/148‑1                                                                                                                                                      CCGCGATTTCCGCGACCCGGGGGCCGCCAAGGGCAAGGTTGAAGAGTGGGCCCAGGGTTTCATCTTCAAGTTCAGCTCTGGCTACACCCCGGGGCTGATCGGTTTTGGCCTGGATGGTATCGCCCTGTTCGGCGTGAAGCTGGACAGCG  >  2:47023/1‑149                                                                                                                                                                                                                                                                                                            GTGCACCGGCAACAGTTCTGAGCCGCTGGTACCGCCGCCGCTGTCCAGCTTCACGCCGAACAGGGCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCTGGGCCCACTCTTCAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4267528‑4267678 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcaaccGCGATTTCCGCGACCCGGGGGCCGCCAAGGGCAAGGTTGAAGAGTGGGCCCAGGGTTTCATCTTCAAGTTCAGCTCTGGCTACACCCCGGGGCTGATCGGTTTTGGCCTGGATGGTATCGCCCTGTTCGGCGTGAAGCTGGACAGCG  <  NC_002947/4267712‑4267566

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.