| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4267678 | 40 (0.710) | 3 (0.060) | 3/244 | NT | 6.6% | coding (180/1254 nt) | galP‑IV | porin‑like protein |
| ? | NC_002947 | = 4267712 | 48 (0.900) | coding (146/1254 nt) | galP‑IV | porin‑like protein | |||||
CACCGGCAACAGTTCTGAGCCGCTGGTACCGCCGCCGCTGTCCAGCTTCACGCCGAACAGGGCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑G‑CC‑CCCC‑TCTTGCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGAC > NC_002947/4267531‑4267824 | cACCGGCAACAGTTCTGAGCCGCTGGTACCGCCGCCGCTGTCCAGCTTCACGCCGAACAGGGCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCt > 3:205459/1‑149 (MQ=255) ccGGCAACAGTTCTGAGCCGCTGGTACCGCCGCCGCTGTCCAGCTTCACGCCGAACAGGGCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTg < 4:205459/149‑1 (MQ=255) aCAGTTCTGAGCCGCTGGTACCGCCGCCGCTGTCCAGCTTCACGCCGAACAGGGCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTg > 8:18327/1‑149 (MQ=255) ttCTGAGCCGCTGGTACCGCCGCCGCTGTCCAGCTTCACGCCGAACAGGGCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTggcgg > 7:75249/1‑149 (MQ=255) cgccgccgcTGTCCAGCTTCACGCCGAACAGGGCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGaaa > 3:100662/1‑149 (MQ=255) cGCTGTCCAGCTTCACGCCGAACAGGGCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCgg > 2:47023‑M2/1‑147 (MQ=255) cTGTCCAGCTTCACGCCGAACAGGGCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGG‑CCCCGGGTCGCGGaaa > 2:42656/1‑140 (MQ=255) cTGTCCAGCTTCACGCCGAACAGGGCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGG‑CCCCGGGTCGCGGaaa < 1:42656/140‑1 (MQ=255) cAGCTTCACGCCGAACAGGGCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCgcgatttccgcgacccgggggccgccaagggcaaggttgaaga < 4:240090‑M1/149‑44 (MQ=255) cAGCTTCACGCCGAACAGGGCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCggttgaag < 7:177318‑M2/148‑9 (MQ=255) cAGCTTCACGCCGAACAGGGCGATACCATCCAGGCCAAAACAGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCggttgaag > 8:64087‑M2/1‑140 (MQ=255) gCTTCACGCCGAACAGGGCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCgcgatttccgcgacccgggggccgccaagggcaaggttgaagagt > 2:12768‑M1/1‑104 (MQ=255) gCTTCACGCCGAACAGGGCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAagtag < 8:159938/149‑1 (MQ=255) cACGCCGAACAGGGCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCgcgatttccgcgacccgggggccgccaagggcaaggttgaagagtgg < 1:12768‑M1/147‑48 (MQ=255) gCCGAACAGGGCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTgc > 4:276462/1‑149 (MQ=255) gCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAg < 3:276462/149‑1 (MQ=255) gATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGcc > 7:127561/1‑149 (MQ=255) aTCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑Ct > 4:326082/1‑149 (MQ=255) gCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCATTGGCGGCCACCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCCCC‑‑CTT‑GGCa > 4:20615/1‑148 (MQ=255) ccAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATc > 2:293512/1‑149 (MQ=255) cAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCTGGGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGACGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATc > 1:98786/1‑149 (MQ=255) aaaCCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTc > 6:322670/1‑149 (MQ=255) aCCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCa < 8:75249/149‑1 (MQ=255) ccGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCaa < 4:100662/149‑1 (MQ=255) ccGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCaa < 8:177318/149‑1 (MQ=255) gCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCaa < 4:113046/142‑1 (MQ=255) gCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCaa > 3:113046/1‑142 (MQ=255) cGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCTTCTTGGAAGAT‑G‑ccaaggg < 7:18327/149‑6 (MQ=255) cGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑G‑cc‑ccccc < 5:322670/149‑2 (MQ=255) tAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GCCC‑CCCC‑TCTTgcg > 5:286893/1‑149 (MQ=255) ccAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑g > 4:204747/1‑117 (MQ=255) ccAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑g < 3:204747/117‑1 (MQ=255) gagCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCGTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑G‑CC‑CCCC‑TCTTGCTCCCAGGc < 8:127561/149‑1 (MQ=255) gCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GCCC‑CCCC‑TCTTGCGCCCAGGcc > 7:136325/1‑149 (MQ=255) cTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAAGG‑CC‑CCCC‑TCGTGCGCCCCGGCCg > 8:213236/1‑149 (MQ=255) cTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCACCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGGGCAATGTCAGCGCACC‑‑CTT‑GGCCTCGTCCAAGAA‑G‑CC‑CCCCGTCGTGCGCCCGGGCCg > 8:207797/1‑149 (MQ=255) cTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GCCC‑CCCC‑TCTTGCGCCCAGGCCGGCaaa < 2:98786/149‑1 (MQ=255) ttGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GCCC‑CCCC‑TCTTGCGCCCAGGCCGGCAAAc > 4:84120/1‑149 (MQ=255) gAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGTTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCAAC‑‑CTT‑GGCATCTTCCAAGAA‑GCCC‑CCCC‑TCTTCCGCCCAGGCAGCCCAAcc > 4:141191/1‑148 (MQ=255) aGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GCCC‑CCCC‑TCTTGCGCCCAGGCCGGCAAACCAAg > 8:166975/1‑149 (MQ=255) aGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GCCC‑CCCC‑TCTTGCGCCCAGGCCGGCAAACCAAg < 6:286893/149‑1 (MQ=255) aGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GCCC‑CCCC‑TCTTGCGCCCAGGCCGGCAAACCAAg < 7:207797/149‑1 (MQ=255) aGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GCCC‑CCCC‑TCTTGCGCCCAGGCCGGCAAACCAAg < 7:213236/149‑1 (MQ=255) gAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAACTAGTAGTTTCGCAATTTCATCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑T‑CC‑CCCC‑TATTGCGCCCAGGCCGGCAAACCAAGGACa > 2:167282/1‑148 (MQ=255) aaCCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑G‑CCACCCC‑TCTTGCGCCCCGGCCGGCAAAACAACGCCaa > 4:288195/1‑148 (MQ=255) cccACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GCCC‑CCCC‑TCTTGCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCg > 7:218863/1‑148 (MQ=255) ccACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCggttgaagagtgggcccagggtttcatcttcaagttcagctctggctacaccccggggctgatcggttttggcctggatggtatcgccctgttcggcgtg < 1:12768‑M2/147‑101 (MQ=255) ccACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑G‑CC‑CCCC‑TCTTGCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGaaa > 4:36485/1‑149 (MQ=255) cACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCTGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GCCC‑CCCC‑TCTTGCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGaaa < 3:288195/149‑1 (MQ=255) aCTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCggttgaagagtgggcccagggtttcatcttcaagttcagctctggctacaccccggggctgatcggttttggcctggatggtatcgccctgttcggcgtgaagc > 2:12768‑M2/1‑45 (MQ=255) tctTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCggttgaagagtgggcccagggtttcatcttcaagttcagctctggctacaccccggggctgatcggttttggcctggatggtatcgccctgttcggcgtgaagctg < 4:240090‑M2/149‑107 (MQ=255) ctTCAACCgcgatttccgcgacccgggggccgccaagggcaaggttgaagagtgggcccagggtttcatcttcaagttcagctctggctacaccccggggctgatctgttttggcctggatggtatcgccctgttcggcgtgaagctg > 8:64087‑M1/1‑8 (MQ=255) ctTCAACCgcgatttccgcgacccgggggccgccaagggcaaggttgaagagtgggcccagggtttcatcttcaagttcagctctggctacaccccggggctgatcggttttggcctggatggtatcgccctgttcggcgtgaagctg < 7:177318‑M1/148‑141 (MQ=255) aaaCATTGCCC‑TGGCGGGCCCCCGGGGGCGGCAAACGCGGGTGAACTATTATTTGCGCAATTTTACCCCCCCCTCTTCGGCATCTTCCAAGAA‑G‑CC‑CCCC‑TCTTGCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGcc < 1:293512/147‑1 (MQ=255) ccgcgatttccgcgacccgggggccgccaagggcaaggttgaagagtgggcccagggtttcatcttcaagttcagctctggctacaccccggggctgatcggttttggcctggatggtatcgccctgttcggcgtgaagctggacagcg > 2:47023‑M1/1‑2 (MQ=255) ccTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTTCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GCCC‑CCCC‑TCTTGCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGAc < 5:206858/149‑1 (MQ=255) ccTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GCCC‑CCCC‑TCTTGCGCCCAGGCCGGAAAACCAAGGCCAAACGCCAGACAAACAGCCAGCAc > 6:206858/1‑149 (MQ=255) | CACCGGCAACAGTTCTGAGCCGCTGGTACCGCCGCCGCTGTCCAGCTTCACGCCGAACAGGGCGATACCATCCAGGCCAAAACCGATCAGCCCCGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCT‑GGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑G‑CC‑CCCC‑TCTTGCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGAC > NC_002947/4267531‑4267824 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |