New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4785919 | 54 (0.950) | 3 (0.060) | 3/248 | NT | 6.2% | coding (1395/7887 nt) | pvdJ | non‑ribosomal peptide synthetase |
? | NC_002947 | = 4785973 | 40 (0.740) | coding (1341/7887 nt) | pvdJ | non‑ribosomal peptide synthetase |
GCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4785832‑4785919 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcaacCGACCTGTTCAAGGCCAGCACCGTCGAGCGCCTGGTGACGGCCCTGCACACGTTGTTGCAGGACATGGTCGCGGCACCTGCCAGCCGGCTGCTGGACTGTGTCGGTGATGCCGATGCGGTTTTGCACGGTGAGCCCGCGAGCTTCCC < NC_002947/4785973‑4785827 GCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACCGACCTGTTCAAGGCCAGCACCGTCGAGCGCCTGGTGACGGCCCTGCACACGTTGTTGCAG < 7:213288/149‑1 CGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACCGACCTGTTCAAGGCCAGCACCGTCGAGCGCCTGGTGACGGCCCTGCACACGTTGTTGCAGGACAT < 4:92411/149‑1 CTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACCGACCTGTTCAAGGCCAGCACCGTCGAGCGCCTGGTGACGGCCCTGCACACGTTGTTGCAGGACATGGTC < 5:243438/149‑1 AACCGACCTGTTCAAGGCCAGCACCGTCGAGCGCCTGGTGACGGCCCTGCACACGTTGTTGCAGGACATGGTCGCGGCACCTGCCAGCCGGCTGCTGGACTGTGTCGGTGATGCCGATGCGGTTTTGCACGGTGAGCCCGCGAGCTTCC > 5:57054/1‑149 AACCGACCTGTTCAAGGCCAGCACCGTCGAGCGCCTGGTGACGGCCCTGCACACGTTGTTGCAGGACATGGTCGCGGCACCTGCCAGCCGGCTGCTGGACTGTGTCGGTGATGCCGATGCGGTTTTGCACGGTGAGCCCGCGAGCTTCC > 6:186144/1‑149 AACCGACCTGTTCAAGGCCAGCACCGTCGAGCGCCTGGTGACGGCCCTGCACACGTTGTTGCAGGACATGGTCGCGGCACCTGCCAGCCGGCTGCTG > 3:88704/1‑97 AACCGACCTGTTCAAGGCCAGCACCGTCGAGCGCCTGGTGACGGCCCTGCACACGTTGTTGCAGGACATGGTCGCGGCACCTGCCAGCCGGCTGCTG < 4:88704/97‑1 ACCGACCTGTTCAAGGCCAGCACCGTCGAGCGCCTGGTGACGGCCCTGCACACGTTGTTGCAGGACATGGTCGCGGCACCTGCCAGCCGGCTGCTGGACTGTGTCGGTGATGCCGATGCGGTTTTGCACGGTGAGCCCGCGAGCTTCCC > 4:130851/1‑149 GCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4785832‑4785919 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcaacCGACCTGTTCAAGGCCAGCACCGTCGAGCGCCTGGTGACGGCCCTGCACACGTTGTTGCAGGACATGGTCGCGGCACCTGCCAGCCGGCTGCTGGACTGTGTCGGTGATGCCGATGCGGTTTTGCACGGTGAGCCCGCGAGCTTCCC < NC_002947/4785973‑4785827 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |