New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4785919	54 (0.950)	3 (0.060)	3/248	NT	6.2%	coding (1395/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	= 4785973	40 (0.740)					coding (1341/7887 nt)	pvdJ	non‑ribosomal peptide synthetase

GGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTT  >  NC_002947/4785827‑4786118                                                                                                                                                   |                                                                                                                                                  gggAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGgt                                                                                                                                                 >  4:130851‑M2/1‑147 (MQ=255)  ggAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGgtt                                                                                                                                                >  5:57054‑M2/1‑146 (MQ=255)  ggAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGgtt                                                                                                                                                >  6:186144‑M2/1‑146 (MQ=255)        tCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAg                                                                                                                                          >  3:67361/1‑149 (MQ=255)          gcgGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAg                                                                                                                                          <  1:62810/147‑1 (MQ=255)          gcgGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGt                                                                                                                                        >  5:356969/1‑149 (MQ=255)           cgGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTg                                                                                                                                       <  2:32679/149‑1 (MQ=255)             ggCTCACCGTGCAAAACCGCATCGGCATCGCCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGCGCTGGCCTTGAACAGGTCGGTTGCATAGGTGaa                                                                                                                                     <  5:323678/149‑1 (MQ=255)             ggCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGaa                                                                                                                                     <  2:8/149‑1 (MQ=255)                   ccGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGc                                                                                                                               <  7:61170/149‑1 (MQ=255)                    cGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGcc                                                                                                                              >  6:92762/1‑149 (MQ=255)                      tGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTg                                                                                                                            <  4:67361/149‑1 (MQ=255)                       tgcaaaCCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTg                                                                                                                            >  3:343568/4‑148 (MQ=255)                        cAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGa                                                                                                                          <  5:92762/149‑1 (MQ=255)                        cAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGa                                                                                                                          <  3:64356/149‑1 (MQ=255)                         aaaaCCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGa                                                                                                                          >  2:258053/1‑148 (MQ=255)                         aaaaCCGCATCGGCATCACCGACACAGTACAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTCGCATAGGTGAAGTACGCCTGGa                                                                                                                          >  1:294741/1‑148 (MQ=255)                            aCCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACTTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATAcc                                                                                                                      <  1:342653/149‑1 (MQ=255)                             ccGCATCGGCATCACCGCCACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCCACAACGTGTGCAGGGCCGTCACCAGGCGCTCGCCGGTGCTGGCCATGAACAGGTCGGTTGCAGAGCTGAACTGCGCCTGGATACCg                                                                                                                     >  8:238721/1‑149 (MQ=255)                                     gCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCg                                                                                                                  >  2:36706/1‑144 (MQ=255)                                     gCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCg                                                                                                                  <  1:36706/144‑1 (MQ=255)                                          aCCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCgg                                                                                                        >  3:164186/1‑149 (MQ=255)                                            cGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGt                                                                                                       >  1:222210/1‑148 (MQ=255)                                              acacAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGaa                                                                                                    <  6:220731/149‑1 (MQ=255)                                                    tCCAGCAGCCGGCTTGCAGGGGCCTCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGATGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGaa                                                                                              <  7:238721/149‑1 (MQ=255)                                                      cagcagCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGgtt                                                                                                                                                <  4:88704‑M2/97‑4 (MQ=255)                                                      cagcagCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGgtt                                                                                                                                                >  3:88704‑M2/1‑94 (MQ=255)                                                       agcagcCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGc                                                                                           <  1:101454/149‑1 (MQ=255)                                                        gcagcCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGcc                                                                                          <  4:164186/149‑1 (MQ=255)                                                                    cAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAAcgc                                                                              >  5:135977/1‑149 (MQ=255)                                                                     aGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAAcgcg                                                                             >  3:153178/1‑149 (MQ=255)                                                                              gACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGgttgcaggacatggtcgcggcacctgccagccggctgctggactgtgtcggtgatgccgatgcggttttgcacggtgag                                                                    <  5:243438‑M2/149‑80 (MQ=255)                                                                                ccATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGcgccg                                                                  <  6:356969/149‑1 (MQ=255)                                                                                  aTGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGgttgcaggacatggtcgcggcacctgccagccggctgctggactgtgtcggtgatgccgatgcggttttgcacggtgagcccg                                                                <  4:92411‑M2/149‑84 (MQ=255)                                                                                       cTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGgttgcaggacatggtcgcggcacctgccagccggctgctggactgtgtcggtgatgccgatgcggttttgcacggtgagcccgcgagc                                                           <  7:213288‑M2/149‑89 (MQ=255)                                                                                       cTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTCGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACg                                                           <  2:294741/149‑1 (MQ=255)                                                                                        tGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACgg                                                          >  8:285249/1‑149 (MQ=255)                                                                                           aacaacGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTa                                                       <  7:285249/149‑1 (MQ=255)                                                                                           aacaacGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTa                                                       >  3:176580/1‑149 (MQ=255)                                                                                                    tgCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGAc                                              <  4:343568/149‑1 (MQ=255)                                                                                                           ccGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGcgccg                                                                  <  4:295336/122‑1 (MQ=255)                                                                                                           ccGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGcgccg                                                                  >  3:295336/1‑122 (MQ=255)                                                                                                                         tCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCtt                         >  5:284580/1‑149 (MQ=255)                                                                                                                             cGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTgcgc                     <  6:135977/149‑1 (MQ=255)                                                                                                                                 gCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCgctgct                 >  8:309742/1‑149 (MQ=255)                                                                                                                                     gCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTcgcc             <  4:176580/149‑1 (MQ=255)                                                                                                                                       cTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGGATTGCGGTGAGcgccgc           >  3:68225/1‑149 (MQ=255)                                                                                                                                             cAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGAc                                              <  6:337914/108‑1 (MQ=255)                                                                                                                                             cAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGAc                                              >  5:337914/1‑108 (MQ=255)                                                                                                                                              aGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCa      <  3:70765/147‑1 (MQ=255)                                                                                                                                              aGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCa      >  4:70765/1‑147 (MQ=255)                                                                                                                                                gTCGGTTGCATAGGTGTAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTAAACGGGTACTCCTCGCCCTGCAGACCGCTGACGGTCTTGCGATGCTCGCCGCCGGCAGCtt  >  6:161095/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                  GGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTT  >  NC_002947/4785827‑4786118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.