New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4860136 | 49 (0.860) | 3 (0.060) | 3/238 | NT | 6.3% | coding (914/2331 nt) | ligA | DNA ligase |
? | NC_002947 | = 4860160 | 45 (0.870) | coding (890/2331 nt) | ligA | DNA ligase |
TGCAGGGTGGCGTTGGACACCGTCACACCGGCCACCTTGACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4859980‑4860136 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccagcgcgAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTGGCCGTACGGGTGCAGTAACGCCTGTGGCGCGGCTGAAGCCGGTCAAG < NC_002947/4860160‑4860015 TGCAGGGTGGCGTTGGACACCGTCACACCGGCCACCTTGACCGGCTTCAGCCGCGCAACAGGAGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGC > 8:252813/1‑149 CAGGGTGGCGTTGGACACCGTCACACCGGCCACCTTGACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCC > 6:371710/1‑148 GGTGGCGTTGGACACCGTCACACCGGCCACCTTGACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGC < 4:89208/149‑1 ACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTG < 7:252813/149‑1 TCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGG > 5:72400/1‑144 TCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGG < 6:72400/144‑1 GCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCA < 5:13615/91‑1 GCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCA > 6:13615/1‑91 aaGCCCAGCTCGCGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTGGCCGTACGGGTGCAGTAACGCCTGTGGCGCGGCTGAAG > 1:160424/3‑149 CCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGATGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTGGCCGTACGGGTGCAGTAACGCCTGTGGCGCGGCTGAAGCCGG > 3:118440/1‑149 CCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTGGCCGTACGG > 7:35051/1‑116 CCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTGGCCGTACGG < 8:35051/116‑1 GCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTGGCCGTACGGGTGCAGTAACGCCTGTGGCGCGGCTGAAGCCGGTC > 4:190957/1‑148 GCGTGCTTGGCTTCCGCGCCCGTGAGGCGCGGTGGGGGTTTGCCCTCAAGTTCCCGGCCATGTAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTGGCCGTACGGGTGCAGTAACGCCTGTGGCGCGGCTGAAGCCGGTCAAG < 2:19108/149‑1 GCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTGGCCGTACGGGTGCAGTAACGCCTGTGGCGCGGCTGAAGCCGGTCAAG < 4:16553/149‑1 GCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTGGCCGTACGGGTGCAGTAACGCCTGTGGCGCGGCTGAAGCCGGTCAAG < 7:157997/149‑1 TGCAGGGTGGCGTTGGACACCGTCACACCGGCCACCTTGACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4859980‑4860136 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccagcgcgAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTGGCCGTACGGGTGCAGTAACGCCTGTGGCGCGGCTGAAGCCGGTCAAG < NC_002947/4860160‑4860015 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |