New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4860136	49 (0.860)	3 (0.060)	3/238	NT	6.3%	coding (914/2331 nt)	ligA	DNA ligase
	?	NC_002947	= 4860160	45 (0.870)					coding (890/2331 nt)	ligA	DNA ligase

CTTGACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGTTTGAGCTCGCGGCTGATCGGCAGGCC  >  NC_002947/4860015‑4860308                                                                                                                                                  |                                                                                                                                                     cTTGACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTcgc                                                                                                                                                   <  4:16553‑M2/149‑4 (MQ=255) cTTGACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTcgc                                                                                                                                                   <  7:157997‑M2/149‑4 (MQ=255) cTTGACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTACATGGCCGGGAACTTGAGGGCAAACCCCCACCGCGCCTCACGGGCGCGGAAGCCAAGCAcgc                                                                                                                                                   <  2:19108‑M2/149‑4 (MQ=255)    gACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTcgcgc                                                                                                                                                 >  4:190957‑M2/1‑143 (MQ=255)      ccGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCATCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTcgcgctgg                                                                                                                                              >  3:118440‑M2/1‑141 (MQ=255)          cTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCGcgagctgggctt                                                                                                                                          >  1:160424‑M2/1‑137 (MQ=255)                  gcgcCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTg                                                                                                                                  <  5:371710/149‑1 (MQ=255)                    gcCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGtt                                                                                                                                <  3:16553/149‑1 (MQ=255)                              ttACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAac                                                                                                                      <  7:201017/149‑1 (MQ=255)                                aCTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCAGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAaca                                                                                                                     >  2:322384/1‑148 (MQ=255)                                 cTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAacac                                                                                                                    >  4:244319/1‑148 (MQ=255)                                    cACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTAcc                                                                                                                >  3:104906/1‑149 (MQ=255)                                       ccGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTcgcgctgg                                                                                                                                              >  7:35051‑M2/1‑108 (MQ=255)                                       ccGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTcgcgctgg                                                                                                                                              <  8:35051‑M2/116‑9 (MQ=255)                                       ccGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCg                                                                                                             >  2:200853/1‑149 (MQ=255)                                       ccGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCg                                                                                                             >  3:29699/1‑149 (MQ=255)                                        cGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGt                                                                                                            <  8:157997/149‑1 (MQ=255)                                         gTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTc                                                                                                           >  3:140754/1‑149 (MQ=255)                                            cGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGAt                                                                                                        >  6:332106/1‑149 (MQ=255)                                            cGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGAt                                                                                                        <  5:332106/149‑1 (MQ=255)                                             ggCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGAtc                                                                                                       <  3:244319/149‑1 (MQ=255)                                              gCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGAtct                                                                                                      <  1:143983/149‑1 (MQ=255)                                              gCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGAtct                                                                                                      <  4:140754/149‑1 (MQ=255)                                                       gAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCa                                                                                             <  8:20161/149‑1 (MQ=255)                                                                        ccTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTAcgccgc                                                                               >  2:132934/1‑146 (MQ=255)                                                                        ccTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTAcgccgc                                                                               <  1:132934/146‑1 (MQ=255)                                                                         cTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGc                                                                           >  4:118086/1‑149 (MQ=255)                                                                            ggTCAGCTCTTCCATTGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCTCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTCACCTTGAACACTACCCCGTCGATCTCATACGGCATGCTGTTACGCCGCTCGCCa                                                                         <  7:65712/148‑1 (MQ=255)                                                                            ggTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCaa                                                                        <  4:104906/149‑1 (MQ=255)                                                                                 gCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTcg                                                                   <  4:29699/149‑1 (MQ=255)                                                                                   tctTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTcgc                                                                  >  2:40485/1‑148 (MQ=255)                                                                                    ctTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGa                                                                >  8:38962/1‑149 (MQ=255)                                                                                      tCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTAGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGa                                                                >  8:119761/1‑147 (MQ=255)                                                                                              cGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGAtc                                                                                                       <  3:344025/100‑1 (MQ=255)                                                                                              cGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGAtc                                                                                                       >  4:344025/1‑100 (MQ=255)                                                                                                    cTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCAc                                                 >  2:311297/1‑148 (MQ=255)                                                                                                     ttGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAg                                                     >  6:56698/1‑143 (MQ=255)                                                                                                     ttGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAg                                                     <  5:56698/143‑1 (MQ=255)                                                                                                     ttGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCActc                                               >  2:300551/1‑149 (MQ=255)                                                                                                       gtgGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCtt                                             >  1:311480/1‑149 (MQ=255)                                                                                                        tgGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTc                                            <  3:65110/149‑1 (MQ=255)                                                                                                        tgGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTc                                            <  1:40485/149‑1 (MQ=255)                                                                                                           gCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGAt                                         >  8:14333/1‑149 (MQ=255)                                                                                                                  cccAGCGCGGCTCACGGGCGCGGAAGCCCAGCTcgcgctgggcgattgcccacaagttcccggccatggaagagctgaccgaggtgctggatgtcgagttccaggttggccgtacgggtgcagtaacgcctgtggcgcggctga                                       >  5:72400‑M2/1‑33 (MQ=255)                                                                                                                  cccAGCGCGGCTCACGGGCGCGGAAGCCCAGCTcgcgctgggcgattgcccacaagttcccggccatggaagagctgaccgaggtgctggatgtcgagttccaggttggccgtacgggtgcagtaacgcctgtggcgcggctga                                       <  6:72400‑M2/144‑112 (MQ=255)                                                                                                                  cccAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCctgc                                   <  1:311297/148‑1 (MQ=255)                                                                                                                    cAGCGCGGCTCACGGGCGCGGAAGCCCAGCTcgcgctgggcgattgcccacaagttcccggccatggaagagctgaccgaggtgctggatgtcgagttccaggttggccgtacgggtgcagtaacgcctgtggcgcggctgaagccggt                                <  7:252813‑M2/149‑119 (MQ=255)                                                                                                                          ggCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGttt                          >  6:93139/1‑149 (MQ=255)                                                                                                                          ggCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGttt                          <  1:300551/149‑1 (MQ=255)                                                                                                                          ggCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTAGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGttt                          <  7:119761/149‑1 (MQ=255)                                                                                                                               aCGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGTTTGAg                       <  1:322384/147‑1 (MQ=255)                                                                                                                                     gcgGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGTTTGAGCTCGCGGc               <  5:93139/149‑1 (MQ=255)                                                                                                                                       ggAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGTTTGAGCTCGCGGCt              >  4:346221/1‑148 (MQ=255)                                                                                                                                        gAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGTTTGAGCTCGCGGCTGa            <  1:19108/149‑1 (MQ=255)                                                                                                                                             ccAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGttt                          >  1:312846/1‑130 (MQ=255)                                                                                                                                             ccAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGttt                          <  2:312846/130‑1 (MQ=255)                                                                                                                                                  tCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGTTTGAGCTCGCGGCTGATCGGCAGGcc  >  1:73056/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     CTTGACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGGCTCACGGGCGCGGAAGCCCAGCTCGCGCTGGGCGGCCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGTTTGAGCTCGCGGCTGATCGGCAGGCC  >  NC_002947/4860015‑4860308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.