| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4986738 = | 60 (1.060) | 4 (0.070) | 4/248 | NT | 7.0% | coding (63/315 nt) | flgM | flagellin biosynthesis negative regulator FlgM |
| ? | NC_002947 | 4986787 = | 49 (0.910) | coding (112/315 nt) | flgM | flagellin biosynthesis negative regulator FlgM | |||||
GCGCTGTTGACCACGGGCTCGTCGCGCAGCTTGTCGCTGATCTTCTGCAACTGCTGTGCCTCTTGGCTGAGGTGTACCGCCTCTCCGCTGGCGCTGGTGTCTTTCACCGCTTCCTGGCTGGCTGCCGGTTTTTCGGCGCTGCCGGACGCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4986890‑4986738‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggtgAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCAACAGCGCCCGTGTGGCCCAGTTGAAGCAGGCGATCGCCGACGGCAGCTAC > NC_002947/4986787‑4986933 GCGCTGGTGACCACGGGCTCGTCGCGCAGCTTGTCGCTGATCTTCTGCAACTGCTGTGCCTCTTGGCTGAGGTGTACCGCCTCTCCGCTGGCGCTGGTGTCTTTCACCGCTTCCTGGCTGGCTGCCGGTTTTTCGGCGCTGCCGGACGC < 5:212511/149‑1 CGCTGTTGACCACGGGCTCGTCGCGCAGCTTGTCGCTGATCTTCTGCAACTGCTGTGCCTCTTGGCTGAGGTGTACCGCCTCTCCGCTGGCGCTGGTGTCTTTCACCGCTTCCTGGCTGGCTGCCGGTTTTTCGGCGCTGCCGGACGCG < 2:152081/149‑1 CGCTGTTGACCACGGGCTCGTCGCGCAGCTTGTCGCTGATCTTCTGCAACTGCTGTGCCTCTTGGCTGAGGTGTACCGCCTCTCCGCTGGCGCTGGTGTCTTTCACCGCTTCCTGGCTGGCTGCCGGTTTTTCGGCGCTGCCGGACGCG < 6:347274/149‑1 GCTGTTGACCACGGGCTCGTCGCGCAGCTTGTCGCTGATCTTCTGCAACTGCTGTGCCTCTTGGCTGAGGTGTACCGCCTCTCCGCTGGCGCTGGTGTCTTTCACCGCTTCCTGGCTGGCTGCCGGTTTTTCGGCGCTGCCGGACGCGG < 4:117218/149‑1 TGTTGACCACGGGCTCGTCGCGCAGCTTGTCGCTGATCTTCTGCAACTGCTGTGCCTCTTGGCTGAGGTGTACCGCCTCTCCGCTGGCGCTGGTGTCTTTCACCGCTTCCTGGCTGGCTGCCGGTTTTTCGGCGCTGCCGGACGCGGTG > 2:76253/1‑149 TGTTGACCACGGGCTCGTCGCGCAGCTTGTCGCTGATCTTCTGCAACTGCTGTGCCTCTTGGCTGAGGTGTACCGCCTCTCCGCTGGCGCTGGTGTCTTTCACCGCTTCCTGGCTGGCTGCCGGTTTTTCGGCGCTGCCGGACGCGGTG > 3:76473/1‑149 TCACCGCTTCCTGGCTGGCTGCCGGTTTTTCGGCGCTGCCGGACGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCAA > 3:158996/1‑148 ACCGCTTCCTGGCTGGCTGCCGGTTTTTCGGCGCTGCCGGACGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGC > 7:260197/1‑124 ACCGCTTCCTGGCTGGCTGCCGGTTTTTCGGCGCTGCCGGACGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGC < 8:260197/124‑1 GCTGCCGGACGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCAACAGCGCCCGTGTGGCCCAGTTGAAGCAGGCGATCG < 4:158996/149‑1 TGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCAACAGCGCCCGTGTGGCCCAGTTGAAGCAGGCGATCGCCGACGGCAGCTAC > 6:244229/1‑149 GCGCTGTTGACCACGGGCTCGTCGCGCAGCTTGTCGCTGATCTTCTGCAACTGCTGTGCCTCTTGGCTGAGGTGTACCGCCTCTCCGCTGGCGCTGGTGTCTTTCACCGCTTCCTGGCTGGCTGCCGGTTTTTCGGCGCTGCCGGACGCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4986890‑4986738‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggtgAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCAACAGCGCCCGTGTGGCCCAGTTGAAGCAGGCGATCGCCGACGGCAGCTAC > NC_002947/4986787‑4986933 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |