New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4986738 =	60 (1.060)	4 (0.070)	4/248	NT	7.0%	coding (63/315 nt)	flgM	flagellin biosynthesis negative regulator FlgM
	?	NC_002947	4986787 =	49 (0.910)					coding (112/315 nt)	flgM	flagellin biosynthesis negative regulator FlgM

ACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCAACAGCGCCCGTGTGGCCCAGTTGAAGCAGGCGATCGCCGACGGCAGCTAC  >  NC_002947/4986639‑4986933                                                                                                                                                     |                                                                                                                                                   aCAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGa                                                                                                                                                    <  4:169542/149‑1 (MQ=255)  ttgaccacgggctcgtcgcgcagcttgtcgctgatcttctgcaactgctgtgcctcttggctgaggtgtaccgcctctccgctggcgctggtgtctttCACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGa                                                                                                                                                    >  3:158996‑M1/99‑148 (MQ=255)  cAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGaa                                                                                                                                                   <  1:14295/149‑1 (MQ=255)      gCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGa                                                                                                                                                >  8:340668/1‑148 (MQ=255)        aaGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGaaa                                                                                                                                                  <  5:157657/144‑1 (MQ=255)        aaGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGaaa                                                                                                                                                  >  6:157657/1‑144 (MQ=255)                 aaTACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGTAAGCGGTGAAAGACAccagcgccag                                                                                                                                    <  4:346589/149‑1 (MQ=255)                      ccAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACAccagcgccagcg                                                                                                                                  >  3:191509/1‑146 (MQ=255)                         gagGTTTCTGATCATGGTCATTGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAgg                                                                                                                            <  2:229078/149‑1 (MQ=255)                            gTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCgg                                                                                                                         <  6:96833/149‑1 (MQ=255)                                   aTCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTacac                                                                                                                    <  4:151658/147‑1 (MQ=255)                                   aTCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCt                                                                                                                  >  2:23432/1‑149 (MQ=255)                                    tCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCt                                                                                                                  >  8:26449/1‑148 (MQ=255)                                     cATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCa                                                                                                                >  5:330628/1‑149 (MQ=255)                                        ggTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAACGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGc                                                                                                              >  1:212195/1‑148 (MQ=255)                                         gTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGcc                                                                                                             <  7:32452/148‑1 (MQ=255)                                            aTCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAaga                                                                                                         <  2:326949/149‑1 (MQ=255)                                            aTCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAaga                                                                                                         <  7:218466/149‑1 (MQ=255)                                              cGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAgg                                                                                                       >  5:28305/1‑149 (MQ=255)                                                  ttCAGTCGTTTGAATAACTCTCCGTCCTTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGga                                                                                                                                <  3:197430/120‑1 (MQ=255)                                                  ttCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGgaga                                                                                                                              <  6:58482/122‑1 (MQ=255)                                                  ttCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGgaga                                                                                                                              >  5:58482/1‑122 (MQ=255)                                                  ttCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGga                                                                                                                                >  4:197430/1‑120 (MQ=255)                                                  ttCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCgg                                                                                                                         >  5:189440/1‑127 (MQ=255)                                                  ttCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCgg                                                                                                                         <  6:189440/127‑1 (MQ=255)                                                    cAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCAcag                                                                                                  <  4:191509/148‑1 (MQ=255)                                                     aGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCAcag                                                                                                  >  1:76253/1‑147 (MQ=255)                                                     aGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCAGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCCCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCAcagca                                                                                                >  7:227919/1‑149 (MQ=255)                                                         gTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCCCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGtt                                                                                             <  8:227919/148‑1 (MQ=255)                                                            tGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTg                                                                                            >  3:186483/1‑146 (MQ=255)                                                            tGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCa                                                                                          <  7:340668/148‑1 (MQ=255)                                                             gAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGTGGTACACCTCAGCCAAGAGGCACAGCAGTTGCag                                                                                         >  8:287288/1‑148 (MQ=255)                                                               aTAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCa                                                                                                                >  7:54492/1‑123 (MQ=255)                                                               aTAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCa                                                                                                                <  8:54492/123‑1 (MQ=255)                                                                   ctctCCGTCCGTCACGGGCGGCGTGCGCGTCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGca                                                                                                     <  3:252900/130‑1 (MQ=255)                                                                   ctctCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGca                                                                                                     >  4:252900/1‑130 (MQ=255)                                                                            cgtcACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGc                                                                         >  2:12049/1‑149 (MQ=255)                                                                              tcACGGGCGGCGTTCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTg                                                                       <  7:26449/149‑1 (MQ=255)                                                                               cACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTgc                                                                      >  7:284537/1‑149 (MQ=255)                                                                                 cGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTgcgc                                                                    <  5:275569/149‑1 (MQ=255)                                                                                      ggcgTGCGCGGCAACACCGCGTCCGGCAGCGACGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGcgac                                                                 >  4:155517/1‑147 (MQ=255)                                                                                       gcgTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGTGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAg                                                              <  7:287288/149‑1 (MQ=255)                                                                                       gcgTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAg                                                              >  1:95859/1‑149 (MQ=255)                                                                                             gcgGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTg                                                        >  2:303738/1‑149 (MQ=255)                                                                                              cgGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTgg                                                       <  8:284537/149‑1 (MQ=255)                                                                                                gCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCGGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTc                                                     <  6:330628/149‑1 (MQ=255)                                                                                                gCAACACAGCGTCCGGCAGCGCCGAAAAACGGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTc                                                     <  6:254089/149‑1 (MQ=255)                                                                                                   tcaccgcttcctggctggctgccggtttttcggcgctgccggacgcggtgAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCaa                                                   >  3:158996‑M2/51‑148 (MQ=255)                                                                                                   acacCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCaa                                                   >  7:205779/1‑148 (MQ=255)                                                                                                    CACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCAACa                                                 >  2:76253‑M1/1‑149 (MQ=255)                                                                                                    CACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCAACa                                                 >  3:76473‑M1/1‑149 (MQ=255)                                                                                                     accgcttcctggctggctgccggtttttcggcgctgccggacgcggtgAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGc                                                                         <  8:260197‑M2/76‑1 (MQ=255)                                                                                                     accgcttcctggctggctgccggtttttcggcgctgccggacgcggtgAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGc                                                                         >  7:260197‑M2/49‑124 (MQ=255)                                                                                                      CCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCAACAgc                                               <  4:117218‑M1/149‑1 (MQ=255)                                                                                                       CGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCAACAgcg                                              <  6:347274‑M1/149‑1 (MQ=255)                                                                                                       CGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCAACAgcg                                              <  2:152081‑M1/149‑1 (MQ=255)                                                                                                        GCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCACCAgcgc                                             <  5:212511‑M1/149‑1 (MQ=255)                                                                                                          gTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCAACAGCGccc                                           <  1:303738/149‑1 (MQ=255)                                                                                                              ggCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCAACAGCGCCCgtgt                                       >  6:171486/1‑149 (MQ=255)                                                                                                                          aaaCCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCAACAGCGCCCGTGTGGCCCAGTTGaa                           >  2:138423/1‑149 (MQ=255)                                                                                                                            aCCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGGGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCAACAGCGCCCGTGTGGCCCAGTTGAAGc                         <  4:186483/149‑1 (MQ=255)                                                                                                                             ccGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCAACAGCGCCCgt                                         >  6:140651/1‑132 (MQ=255)                                                                                                                             ccGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCAACAGCGCCCgt                                         <  5:140651/132‑1 (MQ=255)                                                                                                                                    ccagccagGAAGCGGTGAAAGTCACCAGCGCCAGCGGAGAGGCTGTACACCTCAGCCTAGAGGCACAGCTGTTGCAGAAGATCAGCGACATGCTGCGCGTCGAGCCCGTGGTCTACAGCGCCCGTGTGGCCGAGTTGAAGCAGGCGATc                 <  2:212195/149‑1 (MQ=255)                                                                                                                                     gctgccggacgcggtgAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCAACAGCGCCCGTGTGGCCCAGTTGAAGCAGGCGATCg                <  4:158996‑M2/133‑1 (MQ=255)                                                                                                                                          agGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCAACAGCGCCCGTGTGGCCCAGTTGaa                           >  1:189491/1‑133 (MQ=255)                                                                                                                                          agGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCAACAGCGCCCGTGTGGCCCAGTTGaa                           <  2:189491/133‑1 (MQ=255)                                                                                                                                                   tgAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCAACAGCGCCCGTGTGGCCCAGTTGAAGCAGGCGATCGCCGACGGCAGCTAc  >  6:244229‑M2/3‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   ACAAGGCAAGCGTCCAAATACCCAGAGGTTTCTGATCATGGTCATCGACTTCAGTCGTTTGAATAACTCTCCGTCCGTCACGGGCGGCGTGCGCGGCAACACCGCGTCCGGCAGCGCCGAAAAACCGGCAGCCAGCCAGGAAGCGGTGAAAGACACCAGCGCCAGCGGAGAGGCGGTACACCTCAGCCAAGAGGCACAGCAGTTGCAGAAGATCAGCGACAAGCTGCGCGACGAGCCCGTGGTCAACAGCGCCCGTGTGGCCCAGTTGAAGCAGGCGATCGCCGACGGCAGCTAC  >  NC_002947/4986639‑4986933

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.