New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5032855	84 (1.480)	5 (0.090)	5/248	NT	6.0%	intergenic (+20/‑390)	PP_4435/PP_4437	hypothetical protein/transposase
	?	NC_002947	= 5032893	77 (1.420)					intergenic (+58/‑352)	PP_4435/PP_4437	hypothetical protein/transposase

GTTTGGGAAGAGTGGGTCGCGGAAGGTCAGGCTCCTGCGCGAGCCTGTGTTGAGGCGGCTATGTTCAAGCCAAGCCTGCTCGTTGAGATGTCCGTAGTAGCAGCAATCGCCTGACGCTTAAAAGCGCACCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5032722‑5032855 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggcGAGCGCCTCTGACCTGTTACCAGGCTGGATAGGCGCCTGCCGGGTGCGCTTTTAAGCGTCAGGCGATTGCTGCTACTACGGACATCTCAACGAGCAGGCTTGGCTTGAACATAGCCGCCTCAACACAGGCTCGCGCAGGAGCCTGAC  <  NC_002947/5032893‑5032747                                                                                                                                                                                                                                                                                           GTTTGGGAAGAGTGGGTCGCGGAAGGTCAGGCTCCTGCGCGAGCCTGTGTTGAGGCGGCTATGTTCAAGCCAAGCCTGCTCGTTGAGATGTCCGTAGTAGCAGCAATCGCCTGACGCTTAAAAGCGCACCCGGCGAGCGCCTCTGACCT                                                                                                                                      >  3:43118/1‑149                           TCAGGCTCCTGCGCGAGCCTGTGTTGAGGCGGCTATGTTCAAGCCAAGCCTGCTCGTTGAGATGTCCGTAGTAGCAGCAATCGCCTGACGCTTAAAAGCGCACCCGGCGAGCGCCTCTGACCTGTTACCAGGCTGCATAGGCGCCTGCC                                                                                                            >  6:361140/1‑149                                   CTGCGCGAGCCTGTGTTGAGGCGGCTATGTTCAAGCCAAGCCTGCTCGTTGAGATGTCCGTAGTAGCAGCAATCGCCTGACGCTTAAAAGCGCACCCGGCGAGCGCCTCTGACCTGTTACCAGGCTGCATAGGCGCCTGCCGGGTGCGC                                                                                                    <  5:361140/149‑1                                      CGCGAGGCTGTGTTGAGGCGGCTATGTTCAAGCCAAGCCTGCTCGTTGAGATGTCCGTAGTAGCAGCAATCGCCTGACGCTTAAAAGCGCACCCGGCGAGCGCCTCTGACCTGTTACCAGGCTGGATAGGCGCCTGCCGGGTGCGCTT                                                                                                  <  2:337127/148‑1                                                     AGGCGGCTATGTTCAAGCCAAGCCTGCTCGTTGAGATGTCCGTAGTAGCAGCAATCGCCTGACGCTTAAAAGCGCACCCGGCGAGCGCCTCTGACCTGTTACCAGGCTGGATAGGCGCCTGCCGGGTGCGCTTTTAAGCGTCAGGCGA                                                                                   <  4:43118/148‑1                                                                                                                                     GCGAGCGCCTCTGACCTGTTACCAGGCTGGATAGGCGCCTGCCGGGTGCGCTTTTAAGCGTCAGGCGATTGCTGCTACTACGGACATCTCAACGAGCAGGCTTGGCTTGAACATAGCCGCCTCAACACAGGCTCCTGCGCGAGCCTGtg  <  6:7137/149‑3                                                                                                                                     GCGAGCGCCTCTGACCTGTTACCAGGCTGGATAGGCGCCTGCCGGGTGCGCTTTTAAGCGTCAGGCGATTGCTGCTACTACGGACATCTCAACGAGCAGGCTTGGCTTGAACATAGCCGCCTCAACACAGGCTCCTGCGCGAGCCTGtg  <  7:107881/149‑3                                                                                                                                                                                                                                                                                           GTTTGGGAAGAGTGGGTCGCGGAAGGTCAGGCTCCTGCGCGAGCCTGTGTTGAGGCGGCTATGTTCAAGCCAAGCCTGCTCGTTGAGATGTCCGTAGTAGCAGCAATCGCCTGACGCTTAAAAGCGCACCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5032722‑5032855 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggcGAGCGCCTCTGACCTGTTACCAGGCTGGATAGGCGCCTGCCGGGTGCGCTTTTAAGCGTCAGGCGATTGCTGCTACTACGGACATCTCAACGAGCAGGCTTGGCTTGAACATAGCCGCCTCAACACAGGCTCGCGCAGGAGCCTGAC  <  NC_002947/5032893‑5032747

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.