| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5093310 = | 40 (0.710) | 3 (0.060) | 3/246 | NT | 6.3% | coding (312/981 nt) | PP_4482 | AraC family transcriptional regulator |
| ? | NC_002947 | 5093404 = | 52 (0.970) | coding (218/981 nt) | PP_4482 | AraC family transcriptional regulator | |||||
CGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCACAAGCTCTTTCTGCTGGCCGACGAGCCGCCTGCGGCGATGGGGGCTGCCTTTTCAGCGGCGCTCAAGCAACTGGCGCGCAGTGGTTGCCTGATCGGTGGCCTGTCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5093462‑5093310‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcggccAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACT > NC_002947/5093404‑5093550 CGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCACAAGCTCTTTCTGCTGGCCGACGAGCCGCCTGCGGCGATGGGGGCTGCCTTTTCAGCGGCGCTCAAGCAACTGGCGCGCAGTGGTTGCCTGATCGGTGGCCTGTC < 2:13738/149‑1 GGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCACAAGCTCTTTCTGCTGGCCGACGAGCCGCCTGCGGCGATGGGGGCTGCCTTTTCAGCGGCGCTCAAGCAACTGGCGCGCAGTGGTTGCCTGATCGGTGGCCTGTCG < 4:175410/149‑1 CTGCTGGCCGACGAGCCGCCTGCGGCGATGGGGGCTGCCTTTTCAGCGGCGCTCAAGCAACTGGCGCGCAGTGGTTGCCTGATCGGTGGCCTGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCC > 3:294599/1‑149 GCCGACGAGCCGCCTGCGGCGATGGGGGCTGCCTTTTCAGCGGCGCTCAAGCAACTGGCGCGCAGTGGTTGCCTGATCGGTGGCCTGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAG > 6:303088/1‑149 GCGGCGCTCAAGCAACTGGCGCGCAGTGGTTGCCTGATCGGTGGCCTGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAA < 5:303088/149‑1 CCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACT > 3:319097/1‑149 CCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACT > 4:66432/1‑149 CGGCTGCCGGGCGAGCCGTGGACCGGCCGCCTGGAGGGCTGCCACAAGCTCTTTCTGCTGGCCGACGAGCCGCCTGCGGCGATGGGGGCTGCCTTTTCAGCGGCGCTCAAGCAACTGGCGCGCAGTGGTTGCCTGATCGGTGGCCTGTCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5093462‑5093310‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcggccAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCGGCAGCCGCCAGGCGCCTTCCTGCGCAGGCTCGGCCTGCAGGAAGACCAACTCGTAGACCACATCCGGATGCACACGCTGCGCCACCAGCAACACT > NC_002947/5093404‑5093550 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |