New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5093310 =	40 (0.710)	3 (0.060)	3/246	NT	6.3%	coding (312/981 nt)	PP_4482	AraC family transcriptional regulator
	?	NC_002947	5093404 =	52 (0.970)					coding (218/981 nt)	PP_4482	AraC family transcriptional regulator

GGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCG  >  NC_002947/5093163‑5093455                                                                                                                                                    |                                                                                                                                                  agtgttgctggtggcgcagcgtgtgcatccggatgtggtctacgagttggtcttcctgcaggccgagcctgcgcaggaaggcgcctggcggctgccgggcgagccgtggaccggccgcctggagggctgccacaagctctttctgctgg                                                                                                                                                  >  4:66432‑M1/148‑149 (MQ=255) agtgttgctggtggcgcagcgtgtgcatccggatgtggtctacgagttggtcttcctgcaggccgagcctgcgcaggaaggcgcctggcggctgccgggcgagccgtggaccggccgcctggagggctgccacaagctctttctgctgg                                                                                                                                                  >  3:319097‑M1/148‑149 (MQ=255)   cGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGcc                                                                                                                                                <  2:247945/149‑1 (MQ=255)   cGGTCAGGCGGTCGCGTTCCCAGGCGAACAGGTGGCTGGTGGCAATCACCTTGGGGCAGCGTTCGGCAAAGGCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGcc                                                                                                                                                <  6:309227/149‑1 (MQ=255)       cAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGa                                                                                                                                              >  5:96184/1‑147 (MQ=255)        aGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAg                                                                                                                                           <  5:27373/149‑1 (MQ=255)             gtcgCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCAc                                                                                                                                      <  1:25051/149‑1 (MQ=255)                                  gTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTgcgcg                                                                                                                 >  4:49841/1‑149 (MQ=255)                                     gCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTgcgcgc                                                                                                                >  6:19936/1‑147 (MQ=255)                                     gCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCa                                                                                                              <  3:49841/149‑1 (MQ=255)                                       tggtggCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAg                                                                                                                               <  4:293026/130‑1 (MQ=255)                                       tggtggCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAg                                                                                                                               >  3:293026/1‑130 (MQ=255)                                            gccaTCACCTTGGGGAAGCGTTGGTCTAAGTCATCCTGCCACCGCCAGTGCACGGCTGCCCGGTACCCTGCGAGCAGGCCCATCATTGCCAGCGGATACTCCCCGGCCGACAGCCCAGCGATCAGGCTACCTCTGCGCTCCAGTTGCtt                                                                                                       <  6:369843/146‑1 (MQ=255)                                            gCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCtt                                                                                                       <  1:322266/149‑1 (MQ=255)                                                     ttcctgcaggccgagcctgcgcaggaaggcgcctggcggctgccgggcgagccgtggaccggccgcctggagggctgccacaagctctttctgctGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGcgccgc                                                                                              <  5:303088‑M1/54‑1 (MQ=255)                                                        gggAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTg                                                                                            <  4:161853/148‑1 (MQ=255)                                                           aaGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGaaaa                                                                                        <  3:347748/149‑1 (MQ=255)                                                            aGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAg                                                                                       <  5:19936/149‑1 (MQ=255)                                                                ttCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAg                                                                                   >  3:51981/1‑149 (MQ=255)                                                                      aaaGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGtt                                                                                                           >  6:311310/1‑119 (MQ=255)                                                                      aaaGTCATCCTCCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGtt                                                                                                           <  5:311310/119‑1 (MQ=255)                                                                         gTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATcg                                                                          <  4:303262/149‑1 (MQ=255)                                                                                 gCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAggc                                                                  >  6:191492/1‑149 (MQ=255)                                                                                    aGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAggcggc                                                               <  6:96184/149‑1 (MQ=255)                                                                                    aGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAggcggc                                                               <  7:311888/149‑1 (MQ=255)                                                                                      cgcCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCtc                                                             >  3:280382/1‑149 (MQ=255)                                                                                          aGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCtcgtcg                                                         <  4:51981/149‑1 (MQ=255)                                                                                            tGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGc                                                       <  5:191492/149‑1 (MQ=255)                                                                                            ctgccgggcgagccgtggaccggccgcctggagggctgccacaagctctttctgctGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGc                                                       >  6:303088‑M1/57‑149 (MQ=255)                                                                                              cACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCca                                                     <  2:64225/149‑1 (MQ=255)                                                                                               aCGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACt                                                                                                                      <  4:180644/83‑1 (MQ=255)                                                                                               aCGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACt                                                                                                                      >  3:180644/1‑83 (MQ=255)                                                                                                  ggcgagccgtggaccggccgcctggagggctgccacaagctctttctgctGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCcagcag                                                 >  3:294599‑M1/51‑149 (MQ=255)                                                                                                  gCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCcagcag                                                 <  4:280382/149‑1 (MQ=255)                                                                                                  gCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCcag                                                    >  6:287311/1‑146 (MQ=255)                                                                                                                aTCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGaaaa                                                                                        >  7:147218/1‑96 (MQ=255)                                                                                                                aTCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGaaaa                                                                                        <  8:147218/96‑1 (MQ=255)                                                                                                                aTCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTgg                                    >  2:75120/1‑148 (MQ=255)                                                                                                                aTCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTgg                                    >  6:215477/1‑148 (MQ=255)                                                                                                                aTCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTgg                                    >  7:342370/1‑148 (MQ=255)                                                                                                                aTCGAGCAGGCCCAGCATTGCCAGCGGATACACACCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCACGCGGCTCGTCGGACAGCAGAAAGACCTTCTgg                                    >  4:21697/1‑148 (MQ=255)                                                                                                                       aGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTc                            >  2:252898/1‑149 (MQ=255)                                                                                                                           ccAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAgg                        >  1:19188/1‑149 (MQ=255)                                                                                                                             aGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAggcg                      <  5:215477/149‑1 (MQ=255)                                                                                                                                      aGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCcagc                                                   >  7:184055/1‑111 (MQ=255)                                                                                                                                      aGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCcagc                                                   <  8:184055/111‑1 (MQ=255)                                                                                                                                         ggATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGTCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACgg          <  5:17443/149‑1 (MQ=255)                                                                                                                                                ccccGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGccc   >  1:172833/1‑149 (MQ=255)                                                                                                                                                 cccGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAgg                        >  2:223919/1‑127 (MQ=255)                                                                                                                                                 cccGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAgg                        <  1:223919/127‑1 (MQ=255)                                                                                                                                                 cccGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCg  <  2:172833/149‑1 (MQ=255)                                                                                                                                                 cccGGCCGACAGGCCACCGATCAGGCAACCACTGCGCACCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCg  >  2:6257/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GGCGGTCAGTCGGTCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGCAACCACTGCGCGCCAGTTGCTTGAGCGCCGCTGAAAAGGCAGCCCCCATCGCCGCAGGCGGCTCGTCGGCCAGCAGAAAGAGCTTGTGGCAGCCCTCCAGGCGGCCGGTCCACGGCTCGCCCG  >  NC_002947/5093163‑5093455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.