| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5137095 | 53 (0.940) | 3 (0.060) | 3/246 | NT | 5.3% | coding (507/894 nt) | PP_4522 | LysR family transcriptional regulator |
| ? | NC_002947 | = 5137124 | 58 (1.080) | coding (478/894 nt) | PP_4522 | LysR family transcriptional regulator | |||||
TCGCCGCACTGTGCTTGAAGCCATGCCGGGCCAGTTCGGCCTGGCTCCAATAACCACGGCCGACCATGCGCTGCTGGGTCACTACCTGCTCGGGAATGCGCCGCTCGGCATACAATGGGTGGCGGCTGCTGCAGTACAGCCAGTGCTGTTCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5136941‑5137095‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcggATGAGCGGCCTGCTCTACCAGCCGTTGTACCGCGAACAGCACTGGCTGTACTGCAGCAGCCGCCACCCATTGTATGCCGAGCGGCGCATTCCCGAGCAGGTAGTGACCCAGCAGCGCATGGTCGGCCGTGGTTATTGGAGCCAGGC < NC_002947/5137124‑5136979 TCGCCGCACTGTGCGTGAAGCCATGCCGGGCCAGTTCGGCCTGGCTCCAATAACCACGGCCGACCATGCGCTGCTGGGTCACTACCTGCTCGGGAATGCGCCGCTCGGCATACAATGGGTGGCGGCTGCTGCAGTACAGCCAGTGCTGT < 3:5225/149‑1 CCGCACTGTGCTTGAAGCCATGCCGGGCCAGTTCGGCCTGGCTCCAATAACCACGGCCGACCATGCGCTGCTGGGTCACTACCTGCTCGGGAATGCGCCGCTCGGCATGCAATGGGTGGCGGCTGCTGCAGTACAGCCAGTGCTGTTCG > 5:39272/1‑149 GCACTGTGCTTGAAGCCATGCCGGGCCAGTTCGGCCTGGCTCCAATAACCACGGCCGACCATGCGCTGCTGGGTCACTACCTGCTCGGGAATGCGCCGCTCGGCATACAATGGGTGGCGGCTGCTGCAGTACAGCCAGTGCTGTTCGCG > 6:225393/1‑149 GCTCCAATAACCACGGCCGACCATGCGCTGCTGGGTCACTACCTGCTCGGGAATGCGCCGCTCGGCATACAATGGGTGGCGGCTGCTGCAGTACAGCCAGTGCTGTTCGCGGATGAGCGGCCTGCTCTACCAGCCGTTGTACCGCGAA < 7:253974/148‑1 CACGGCCGACCATGCGCTGCTGGGTCACTACCTGCTCGGGAATGCGCCGCTCGGCATACAATGGGTGGCGGCTGCTGCAGTACAGCCAGTGCTGTTCGCGGATGAGCGGCCTGCTCTACCAGCCGTTGTACCGCGAAC > 3:76171/1‑138 CACGGCCGACCATGCGCTGCTGGGTCACTACCTGCTCGGGAATGCGCCGCTCGGCATACAATGGGTGGCGGCTGCTGCAGTACAGCCAGTGCTGTTCGCGGATGAGCGGCCTGCTCTACCAGCCGTTGTACCGCGAAC < 4:76171/138‑1 TTCGCGGATGAGCGGCCTGCTCTACCAGCCGTTGTACCGCGAACAGCACTGGCTGTACTGCAGCAGCCGCCACCCATTGTATGCCGAGCGGCGCATTCCCGAGCAGGTAGTGACCCAGCAGCGCATGGTCGGCCGTGGTTATTGGAGC > 1:334860/1‑148 CGCGGATGAGCGGCCTGCTCTACCAGCCGTTGTACCGCGAACAGCACTGGCTGTACTGCAGCAGCCGCCACCCATTGTATGCCGAGCGGCGCATTCCCGAGCAGGTAGTGACCCAGCAGCGCATGGTCGGCCGTGGTTATTGGAGC < 1:46334/146‑1 GCGGATGAGCGGCCTGCTCTACCAGCCGTTGTACCGCGAACAGCACTGGCTGTACTGCAGCAGCCGCCACCCATTGTATGCCGAGCGGCGCATTCCCGAGCAGGTAGTGACCCAGCAGCGCATGGTCGGCCGTGGTTATTGGAGCCAGG > 4:130046/1‑149 GCGGATGAGCGGCATGCTCTACCAGCCGTTGTACCGCGAACAGCACTGGCTGTACTGCAGCAGCCGCCACCCATTGTATGCCGAGCGGCGCATTCCCGAGCAGGTAGTGACCCAGCAGCGCATGGTCGGCCGTGGTTATTGGAGCCAG < 2:289953/148‑1 CGGATGAGCGGCCTGCTCTACCAGCCGTTGTACCGCGAACAGCACTGGCTGTACTGCAGCAGCCGCCACCCATTGTATGCCGAGCGGCGCATTCCCGAGCAGGTAGTGACCCAGCAGCGCATGGTCGGCCGTGGTTATTGGAGCCAGGC < 1:265207/149‑1 TCGCCGCACTGTGCTTGAAGCCATGCCGGGCCAGTTCGGCCTGGCTCCAATAACCACGGCCGACCATGCGCTGCTGGGTCACTACCTGCTCGGGAATGCGCCGCTCGGCATACAATGGGTGGCGGCTGCTGCAGTACAGCCAGTGCTGTTCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5136941‑5137095‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcggATGAGCGGCCTGCTCTACCAGCCGTTGTACCGCGAACAGCACTGGCTGTACTGCAGCAGCCGCCACCCATTGTATGCCGAGCGGCGCATTCCCGAGCAGGTAGTGACCCAGCAGCGCATGGTCGGCCGTGGTTATTGGAGCCAGGC < NC_002947/5137124‑5136979 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |