New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5539106	52 (0.920)	3 (0.060)	3/248	NT	5.6%	coding (1880/2355 nt)	PP_4872	hypothetical protein
	?	NC_002947	= 5539144	51 (0.940)					coding (1842/2355 nt)	PP_4872	hypothetical protein

CAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5538958‑5539106 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtacaGGCGTTCTACCCGTCGCCAATGGCCTCGGCCACGGCCATGTACCACTCAGGCAAGAACCCGCTGCGCAAGGTGACCTACAAGAGCGAAGGGGTGGAGATCGTCAAGAGCGACGAGCAACGCCGTCTGCACAAGGCGTTCTTGCGCTAC  <  NC_002947/5539144‑5538997                                                                                                                                                                                                                                                                                                           CAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTAC                                                                                                                                                       <  3:279153/148‑1                                                   ACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACAGGCGTTCTACCCGTCGCCAATGGCCTCGGCCACGGCCATGTACCACTCAG                                                                                                    <  1:187001/149‑1                                                                                  CTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACAGGCGTTCTACCCGTCGCCAATGGCCTCGGCCACGGCCATGTAC                                                                                                           <  5:166989/111‑1                                                                                  CTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACAGGCGTTCTACCCGTCGCCAATGGCCTCGGCCACGGCCATGTAC                                                                                                           >  6:166989/1‑111                                                                                                                                                     AGGCGTTCTACCCGTCGCCAATGGCCTCGGCCACGGCCATGTACCACTCAGGCAAGAACCCGCTGCGCAAGGTGACCTACAAGAGCGAAGGGGTGGAGATCGTCAAGAGCGACGAGCAACGCCGTCTGCACAAGGCGTTCTTGCGCTAC  >  7:191961/1‑149                                                                                                                                                     AGGCGTTCTACCCGTCGCCAATGGCCTCGGCCACGGCCATGTACCACTCAGGCAAGAACCCGCTGCGCAAGGTGACCTACAAGAGCGAAGGGGTGGAGATCGTCAAGAGCGACGAGCAACGCCGTCTGCACAAG                 <  7:202288/134‑1                                                                                                                                                     AGGCGTTCTACCCGTCGCCAATGGCCTCGGCCACGGCCATGTACCACTCAGGCAAGAACCCGCTGCGCAAGGTGACCTACAAGAGCGAAGGGGTGGAGATCGTCAAGAGCGACGAGCAACGCCGTCTGCACAAG                 >  8:202288/1‑134                                                                                                                                                                                                                                                                                                           CAGCGCTTCACGCAGCATCGGCCAGCCCTTCGGGTCGTGGTAGCGCAAGAACGCCTTGTGCAGACGGCGTTGCTCGTCGCTCTTGACGATCTCCACCCCTTCGCTCTTGTAGGTCACCTTGCGCAGCGGGTTCTTGCCTGAGTGGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5538958‑5539106 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtacaGGCGTTCTACCCGTCGCCAATGGCCTCGGCCACGGCCATGTACCACTCAGGCAAGAACCCGCTGCGCAAGGTGACCTACAAGAGCGAAGGGGTGGAGATCGTCAAGAGCGACGAGCAACGCCGTCTGCACAAGGCGTTCTTGCGCTAC  <  NC_002947/5539144‑5538997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.