New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5545321 = | NA (NA) | 5 (0.090) | 5/256 | NT | 8.1% | intergenic (‑461/+416) | rpsF/rlmB | 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB |
? | NC_002947 | = 5621245 | 58 (1.020) | coding (19/774 nt) | PP_4939 | hypothetical protein |
CCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5545437‑5545321 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAG < NC_002947/5621245‑5621147 CCTGTCGGCACAGCTTGCTGTGCCCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGCGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGG > 5:236643/1‑149 GAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAA > 6:132479/1‑133 AACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGAT > 4:284699/1‑149 CGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTA < 3:284699/147‑1 GCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAG < 6:236643/149‑1 CCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5545437‑5545321 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAG < NC_002947/5621245‑5621147 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |