New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5575127 =	45 (0.790)	3 (0.060)	3/248	NT	6.3%	coding (167/1041 nt)	motB	flagellar motor rotation protein
	?	NC_002947	5575189 =	47 (0.870)					coding (105/1041 nt)	motB	flagellar motor rotation protein

CATCATCGTCAAGCGCGTCAAGCGCTTTGGCGGCGGCCACCATGGTGGCGCCTGGAAAATCGCCTTTGCCGACTTCGCCACGGCGATGATGGCGTTCTTCCTGGTGCTGTGGCTGTTGTCCACGGCCACGCCTGAGCAGAAGATCGCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5575276‑5575127 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccatCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAGCGCTTGACGCGCTTGACGATGATGGGCTGATTGTTCTCCATGACTCAGCGACCGCGAACCGCTTGTTCCAGTTCGGCGAA  >  NC_002947/5575189‑5575332                                                                                                                                                                                                                                                                                                        CATCATCGTCAAGCGCGTCAAGCGCTTTGGCGGCGGCCACCATGGTGGCGCCTGGAAAATCGCCTTTGCCGACTTCGCCACGGCGATGATGGCGTTCTTCCTGGTGCTGTGGCTGTTGTCCACGGCCACGCCTGAGCAGAAGATCGCCA                                                                                                                                                   <  6:289021/149‑1                                                                                     GATGATGGCGTTCTTCCTGGTGCTGTGGCTGTTGTCCACGGCCACGCCTGAGCAGAAGATCGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAGCGCTTGACGCGCTTGACGA                                                               >  6:29447/1‑149                                                                                      ATGATGGCGTTCTTCCTGGTGCTGTGGCTGTTGTCCACGGCCACGCCTGAGCAGAAGATCGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAGCGCTTGACGCGCTTGACGAT                                                              >  6:257697/1‑149                                                                                                           CTGTGGCTGTTGTCCACGGCCACGCCTGAGCAGAAGATCGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAGCGCTTGACGCGCTTGACGATGATGGGCTGATTGTTCTCCAT                                         <  5:257697/149‑1                                                                                                                                              GATCGCCATCATCGCCGTGGCGAAGTCGGCAATGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAGCGCTTGACGCGCTTGACGATGATGGGCTGATTGTTCTCCATGACTCAGCGACCGCGAACCGCTTGTTCCAGTTCGG      <  5:29447/149‑1                                                                                                                                                  GCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAGCGCTTGACGCGCTTGACGATGATGGGCTGATTGTTCTCCATGACTCAGCGACCGCGAACCGCTTGTTCCAGTTCGGCGAA  <  6:163902/149‑1                                                                                                                                                                                                                                                                                                        CATCATCGTCAAGCGCGTCAAGCGCTTTGGCGGCGGCCACCATGGTGGCGCCTGGAAAATCGCCTTTGCCGACTTCGCCACGGCGATGATGGCGTTCTTCCTGGTGCTGTGGCTGTTGTCCACGGCCACGCCTGAGCAGAAGATCGCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5575276‑5575127 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccatCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAGCGCTTGACGCGCTTGACGATGATGGGCTGATTGTTCTCCATGACTCAGCGACCGCGAACCGCTTGTTCCAGTTCGGCGAA  >  NC_002947/5575189‑5575332

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.