| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5575127 = | 45 (0.790) | 3 (0.060) | 3/248 | NT | 6.3% | coding (167/1041 nt) | motB | flagellar motor rotation protein |
| ? | NC_002947 | 5575189 = | 47 (0.870) | coding (105/1041 nt) | motB | flagellar motor rotation protein | |||||
AGCTGAGTGGGGGACTGCTGCGTCGGCTCGGTCTTCACTTCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAGCGCTTGACGCGCTTGACGA > NC_002947/5574980‑5575271 | aGCTGAGTGGGGGACTGCTGCGTCGGCTCGGTCTTCACTTCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCaa < 1:280137/148‑1 (MQ=255) ttcgccgaactggaacaagcggttcgcggtcgctgagtcatggagaacaatcagcccatcatcgtcaagcgcgtcaagcgctttggcggcggccaccatggtggcgcctggaaaatcgcctttgccgacttcgccacggcgatgATGGc < 6:163902‑M1/5‑1 (MQ=255) ccgaactggaacaagcggttcgcggtcgctgagtcatggagaacaatcagcccatcatcgtcaagcgcgtcaagcgctttggcggcggccaccatggtggcgcctggaaaatcgccattgccgacttcgccacggcgatgATGGCGAtc < 5:29447‑M1/9‑1 (MQ=255) gggACTGCTGCGTCGGCTCGGTCTTCACTTCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGAtcttc < 1:189114/149‑1 (MQ=255) ctgcGTCGGCTCGGTCTTCACTTCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAg > 7:246964/1‑149 (MQ=255) gatgtggCTCGGTCTTCACTTCCGTATTGATTTTTTTGTCCGGCGCCATCTCCGGGGAACGCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCATGc < 6:256727/144‑1 (MQ=255) gCTCGGTCTTCACTTCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGCGGAACCCCCCAGGTCGATGACATAAGGCGAGCCACTCTCGGAGAAACCAATAGGGTCATGTAAGTAGCAGGCAATGGCGATCTTCTGCTCAGGc > 5:256727/1‑143 (MQ=255) tCGGTCTTCACTTCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGt > 5:82016/1‑149 (MQ=255) cGGTCTTCACTTCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTg < 2:283339/149‑1 (MQ=255) ggTCTTCACTTCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTgg < 3:99550/149‑1 (MQ=255) ttCACTTCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGacaa > 5:328863/1‑149 (MQ=255) aCTTCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGacaaca < 4:178139/148‑1 (MQ=255) ttCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGc > 2:269310/1‑148 (MQ=255) tCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCca > 5:770/1‑149 (MQ=255) ccGGAATGACGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGACGTAGACGGCAATGGCGATGTTCTGCTCAGGCGTGGCCGTGGACAACAGCcac < 3:275548/149‑1 (MQ=255) atggagaacaatcagcccatcatcgtcaagcgcgtcaagcgctttggcggcggccaccatggtggcgcctggaaaatcgcctttgccgacttcgccacggcgatgATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAg < 5:257697‑M1/44‑1 (MQ=255) gATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTgg > 6:215459/1‑129 (MQ=255) gATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTgg < 5:215459/129‑1 (MQ=255) gATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCACGCGTGGCCGTGGACAACAGCCCCAGCAc > 3:102219/1‑147 (MQ=255) tGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAg > 3:352827/1‑117 (MQ=255) tGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAg < 4:352827/117‑1 (MQ=255) ggTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAgg < 1:267069/148‑1 (MQ=255) ggTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAgg > 2:267069/1‑148 (MQ=255) gTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGga < 8:246964/148‑1 (MQ=255) gTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAAc < 2:354546/148‑1 (MQ=255) gcgcCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCcat > 2:48533/1‑148 (MQ=255) atcgtcaagcgcgtcaagcgctttggcggcggccaccatggtggcgcctggaaaatcgcctttgccgacttcgccacggcgatgATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCcatcat > 6:257697‑M1/85‑149 (MQ=255) tcgtcaagcgcgtcaagcgctttggcggcggccaccatggtggcgcctggaaaatcgcctttgccgacttcgccacggcgatgATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCatcatc > 6:29447‑M1/84‑149 (MQ=255) cATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCg > 7:17052/1‑149 (MQ=255) aTCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGc > 7:54693/1‑149 (MQ=255) tcCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGt > 1:269132/1‑149 (MQ=255) gAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGaa < 8:54693/149‑1 (MQ=255) cccAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCgg > 8:41358/1‑148 (MQ=255) cccAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGc < 6:328863/149‑1 (MQ=255) gATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGa > 8:58777/1‑149 (MQ=255) gATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGa < 8:17052/149‑1 (MQ=255) aTAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTcc > 7:181678/1‑149 (MQ=255) tGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGcca > 6:149830/1‑149 (MQ=255) gCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGccac > 5:132466/1‑149 (MQ=255) ccACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGccac < 6:132466/148‑1 (MQ=255) ggAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCAtggtg < 1:48533/147‑1 (MQ=255) aaaCCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGgccgcc < 6:82016/149‑1 (MQ=255) aCCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCAtggtg < 7:255935/141‑1 (MQ=255) aCCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCAtggtg > 8:255935/1‑141 (MQ=255) aTAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCaaa < 5:149830/149‑1 (MQ=255) tAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCGCAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAg > 8:41509/1‑149 (MQ=255) gggTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAgcg > 3:159985/1‑149 (MQ=255) ggTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAgcgc < 7:41358/149‑1 (MQ=255) cTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAgcgcttga < 3:247302/149‑1 (MQ=255) gAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCAtg > 3:236476/1‑123 (MQ=255) gAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCAtg < 4:236476/123‑1 (MQ=255) ggCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAGCGCTTAACGCGCTTGACga < 4:159985/149‑1 (MQ=255) | AGCTGAGTGGGGGACTGCTGCGTCGGCTCGGTCTTCACTTCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAGCGCTTGACGCGCTTGACGA > NC_002947/5574980‑5575271 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |