| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5645844 = | 47 (0.830) | 3 (0.060) | 3/246 | NT | 6.3% | coding (1197/2184 nt) | PP_4954 | membrane protein |
| ? | NC_002947 | 5645891 = | 45 (0.840) | coding (1244/2184 nt) | PP_4954 | membrane protein | |||||
AAGATTCGCTGCACCAGCTTGCGCCGCGTGGCCCCATAGTTGGGCTGGCAGACGAACAGCGTGGTGAGGATGATCCAGTAGCCTTGGGTCGGGTGAATCAGGTGCACCATGCCATAGCCGATCGACAGCGCCAGCGGCAGGCGCAAGGCATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5645996‑5645844‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcatggTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCTGCCAGCCCAACTATGGGGCCACGCGGCGCAAGCTGGTGCAGCGAATCTTCGGCACTGCCGTTGGCCTGACAGTGGGTTGGGCCTTGTTCGA > NC_002947/5645891‑5646038 AAGATTCGCTGCACCAGCTTGCGCCGCGTGGCCCCATAGTTGGGCTGGCAGACGAACAGCGTGGTGAGGATGATCCAGTAGCCTTGGGTCGGGTGAATCAGGTGCACCATGCCATAGCCGATCGACAGCGCCAGCGGCAGGCGCAAGGC < 1:203294/149‑1AAGATTCGCTGCACCAGCTTGCGCCGCGTGGCCCCATAGTTGGGCTGGCAGACGAACAGCGTGGTGAGGATGATCCAGTAGCCTTGGGTCGGGTGAATCAGGTGCACCATGCCATAGCCGATCGACAGCGCCAGCGGCAGGCGCAAGGC < 2:185198/149‑1 GCGTGGCCCCATAGTTGGGCTGGCAGACGAACAGCGTGGTGAGGATGATCCAGTAGCCTTGGGTCGGGTGAATCAGGTGCACCATGCCATAGCCGATCGACAGCGCCAGCGGCAGGCGCAAGGCATGG < 5:102479/128‑1 GCGTGGCCCCATAGTTGGGCTGGCAGACGAACAGCGTGGTGAGGATGATCCAGTAGCCTTGGGTCGGGTGAATCAGGTGCACCATGCCATAGCCGATCGACAGCGCCAGCGGCAGGCGCAAGGCATGG > 6:102479/1‑128 AATCAGGTGCACCATGCCATAGCCGATCGACAGCGCCAGCGGCAGGCGCAAGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCTGCCAGCCCAACTATGGGGCCACGCGGCGCAAGCT > 2:130604/1‑149 TCAGGTGCACCATGCCATAGCCGATCGACAGCGCCAGCGGCAGGCGCAAGGCATGG > 3:1482/1‑56 TCAGGTGCACCATGCCATAGCCGATCGACAGCGCCAGCGGCAGGCGCAAGGCATGG < 4:1482/56‑1 TAGCCGATCGACAGCGCCAGCGGCAGGCGCAAGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATC > 7:213205/1‑77 TAGCCGATCGACAGCGCCAGCGGCAGGCGCAAGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATC < 8:213205/77‑1 GCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCTGCCAGCCCAACTATGGGGCCACGCGGCGCAAGCTGGTGCAGCGAATCTTCGGCACTGCCGTTGGCCTGACAGTGGGTTGGGCCTT < 4:263675/148‑1 TGGTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCTGCCAGCCCAACTATGGGGCCACGCGGCGCAAGCTGGTGCAGCGAATCTTCGGCACTGCCGTTGGCCTGACAGTGGGTTGGGCCTTGTTC < 7:244481/149‑1 GTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCTGCCAGCCCAACTATGGGGCCACGCGGCGCAAGCTGGTGCAGCGAATCTTCGGCACTGCCGTTGGCCTGACAGTGGGTTGGGCCTTGTTCGA < 8:247000/149‑1 GTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTC > 3:178521/1‑54 GTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTC < 4:178521/54‑1 AAGATTCGCTGCACCAGCTTGCGCCGCGTGGCCCCATAGTTGGGCTGGCAGACGAACAGCGTGGTGAGGATGATCCAGTAGCCTTGGGTCGGGTGAATCAGGTGCACCATGCCATAGCCGATCGACAGCGCCAGCGGCAGGCGCAAGGCATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5645996‑5645844‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcatggTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCTGCCAGCCCAACTATGGGGCCACGCGGCGCAAGCTGGTGCAGCGAATCTTCGGCACTGCCGTTGGCCTGACAGTGGGTTGGGCCTTGTTCGA > NC_002947/5645891‑5646038 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |