New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5645844 =	47 (0.830)	3 (0.060)	3/246	NT	6.3%	coding (1197/2184 nt)	PP_4954	membrane protein
	?	NC_002947	5645891 =	45 (0.840)					coding (1244/2184 nt)	PP_4954	membrane protein

ACTGGACCGCCTGCTCAGTGCCGCCAGCAACCCGGACAGCCTGGCCG‑ACGCCAGCGACAGCAGCCTGCTCGACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCTGCCAGCCCAACTATGGGGCCACGCGGCGCAAGCTGGTG  >  NC_002947/5645697‑5645985                                                                                                                                                     |                                                                                                                                              tcgaacaaggcccaacccactgtcaggccaacggcagtgccgaagattcgctgcaccagcttgcgccgcgtggccccatagttgggctggcagacgaacagcgtggtgaggatgatccagtagccttgggtcgggtgaatcaggtgcac                                                                                                                                               <  8:247000‑M1/1‑1 (MQ=255)   gaacaaggcccaacccactgtcaggccaacggcagtgccgaagattcgctgcaccagcttgcgccgcgtggccccatagttgggctggcagacgaacagcgtggtgaggatgatccagtagccttgggtcgggtgaatcaggtgcaCCa                                                                                                                                             <  7:244481‑M1/3‑1 (MQ=255)       aaggcccaacccactgtcaggccaacggcagtgccgaagattcgctgcaccagcttgcgccgcgtggccccatagttgggctggcagacgaacagcgtggtgaggatgatccagtagccttgggtcgggtgaatcaggtgcaCCATGc                                                                                                                                          <  4:263675‑M1/6‑1 (MQ=255)        cGCCTGCTCAGTGCCGCCAGCAACCCGGACAGCCTGGCCG‑ACGCCAGCGACAGCAGCCTGCTCGACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGcca                                                                                                                                        >  8:339874/1‑147 (MQ=255)          ccTGCTCAGTGCCGCCAGCAACCCGGACAGCCTGGCCG‑ACGCCAGCGACAGCAGCCTGCTCGACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTgc                                                                                                                                     >  1:33646/1‑149 (MQ=255)              ctctGTGCCGCCAGCAACCCGGACAGCCTGGCCG‑ACGCCAGCGACAGCAGCCTGCTCGACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCTACCTCGCTGTTGTTCCGCCATGCCTTGCGCCt                                                                                                                                 <  2:33646/149‑1 (MQ=255)              cTCAGTGCCGCCAGCAACCCGGACAGCCTGGCCG‑ACGCCAGCGACAGCAGCCTGCTCGACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCt                                                                                                                                 >  2:27641/1‑149 (MQ=255)               tCAGTGCCGCCAGCAACCCGGACAGCCTGGCCG‑ACGCCAGCGACAGCAGCCTGCTCGACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTg                                                                                                                                >  4:33146/1‑149 (MQ=255)                 aGTGCCGCCAGCAACCCGGACAGCCTGGCCG‑ACGCCAGCGACAGCAGCCTGCTCGACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGc                                                                                                                               <  3:33146/148‑1 (MQ=255)                   tGCCGCCAGCAACCCGGACAGCCTGGCCG‑ACGCCAGCGACAGCAGCCTGCTCGACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGc                                                                                                                            >  3:69418/1‑149 (MQ=255)                     ccgccAGCAACCCGGACAGCCTGGCCG‑ACGCCAGCGACAGCAGCCTGCTCGACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTg                                                                                                                          <  1:150383/149‑1 (MQ=255)                      cgccAGCAACCCGGACAGCCTGGCCG‑ACGCCAGCGACAGCAGCCTGCTCGACCCCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCCCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGcc                                                                                                                                              >  6:290555/1‑128 (MQ=255)                       tccAGGAACCCGGTCAGGCGGGGCGCACGCCAGCGACAGCAGCCTGCTCGACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTg                                                                                                                          <  2:175113/147‑1 (MQ=255)                            cAACCCGGACAGCCTGGCCG‑ACGCCAGCGACAGCAGCCTGCTCGACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGt                                                                                                                   <  8:37780/149‑1 (MQ=255)                                ccGGACAGCCTGGCCG‑ACGCCAGCGACAGCAGCCTGCTCGACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGAt                                                                                                               <  6:254017/149‑1 (MQ=255)                                   gccAGCCTGGCCG‑ACGCCAGCGACAGCAGCCTGCTCGACCGCTCTCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCATCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCgg                                                                                                            <  7:228363/147‑1 (MQ=255)                                        ccTGGCCG‑ACGCCAGCGACAGCAGCCTGCTCGACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATg                                                                                                       >  4:190797/1‑149 (MQ=255)                                             ccG‑ACGCCAGCGACAGCAGCCTGCTCGACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGgc                                                                                                                        <  7:187406/127‑1 (MQ=255)                                             ccG‑ACGCCAGCGACAGCAGCCTGCTCGACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGgc                                                                                                                        >  8:187406/1‑127 (MQ=255)                                                   gCCAGCGACAGCAGCCTGCTCGACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCa                                                                                             >  5:326337/1‑149 (MQ=255)                                                   gCCAGCGACAGCAGCCTGCTCGACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCa                                                                                             >  4:53618/1‑149 (MQ=255)                                                      aGCGACAGCAGCCTGCTCGACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCt                                                                                          <  7:211520/149‑1 (MQ=255)                                                          agcttgcgccgcgtggccccatagttgggctggcagacgaacagcgtggtgaggatgatccagtagccttgggtcgggtgaatcaggtgcaCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGAtt                                                                                      >  2:130604‑M1/92‑149 (MQ=255)                                                            agcagcCTGCTCGACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCa                                                                                    >  5:131150/1‑149 (MQ=255)                                                                   tGCTCGACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCAccc                                                                                 <  6:329360/145‑1 (MQ=255)                                                                   tGCTCGACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCAccc                                                                                 >  5:329360/1‑145 (MQ=255)                                                                        gACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAgg                                                                        >  5:206466/1‑149 (MQ=255)                                                                          ccGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGc                                                                       >  3:254831/1‑148 (MQ=255)                                                                           cGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTa                                                                     <  6:326337/149‑1 (MQ=255)                                                                             cTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACt                                                                   >  6:326413/1‑149 (MQ=255)                                                                                         gctGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTAc                                                                    <  4:324290/136‑1 (MQ=255)                                                                                         gctGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTAc                                                                    >  3:324290/1‑136 (MQ=255)                                                                                          ctGAAGGACGTGGGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTcac                                                      <  3:53618/149‑1 (MQ=255)                                                                                           tGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGa                                                                >  5:225614/1‑138 (MQ=255)                                                                                           tGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGa                                                                <  6:225614/138‑1 (MQ=255)                                                                                             aaGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTg                                                                  <  7:217259/134‑1 (MQ=255)                                                                                             aaGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTg                                                                  >  8:217259/1‑134 (MQ=255)                                                                                                gaacagcgtggtgaggatgatccagtagccttgggtcgggtgaatcaggtgcac                                                                                                                                               <  4:178521‑M1/1‑1 (MQ=255)                                                                                                gaacagcgtggtgaggatgatccagtagccttgggtcgggtgaatcaggtgcac                                                                                                                                               >  3:178521‑M1/54‑54 (MQ=255)                                                                                                    tgtgGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTc                                            <  6:206466/149‑1 (MQ=255)                                                                                                        gACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCt                                        >  1:15160/1‑149 (MQ=255)                                                                                                          cgcgCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCTGc                                      <  5:326413/149‑1 (MQ=255)                                                                                                            cgcCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCTGCCa                                    <  1:27641/149‑1 (MQ=255)                                                                                                               gatgatccagtagccttgggtcgggtgaatcaggtgcaCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTa                                                                                                         <  8:213205‑M1/39‑1 (MQ=255)                                                                                                               gatgatccagtagccttgggtcgggtgaatcaggtgcaCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTa                                                                                                         >  7:213205‑M1/39‑77 (MQ=255)                                                                                                                   gcACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCTGCCAGCCCacc                             >  1:49511/1‑147 (MQ=255)                                                                                                                     aCCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCTGCCAGCCCAACt                            >  4:173186/1‑148 (MQ=255)                                                                                                                        cAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCTGCCAGCCCAACTATgg                        <  4:69418/149‑1 (MQ=255)                                                                                                                         aGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACt                                                                   <  8:231202/105‑1 (MQ=255)                                                                                                                         aGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACt                                                                   >  7:231202/1‑105 (MQ=255)                                                                                                                              acacCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCTGCCAGCCCAACTATGGGGCCAc                  >  1:105019/1‑149 (MQ=255)                                                                                                                                acCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCTGCCAGCCCAACTATGGGGCCAcgc                >  7:257031/1‑149 (MQ=255)                                                                                                                                    aCCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCTTGGTGCTCCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCTGCCAGCCCAACTATGGGGCCACgcggcg            >  5:292374/1‑149 (MQ=255)                                                                                                                                             ttgttCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCTGCCAGCCCAACTATGGGGCCACGCGGCGCAAGCTg     <  4:254831/147‑1 (MQ=255)                                                                                                                                             ttgttCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCTGCCAGCCCAACTATGGGGCCACGCGGCGCAAGCTGGt   <  8:257031/149‑1 (MQ=255)                                                                                                                                               gttCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCTTGGTGCTCCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCTGCCAGCCCAACTATGGGGCCACGCGGCGCAAGCTGGTg  <  6:292374/148‑1 (MQ=255)                                                                                                                                                ttCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCTGCCAGCCCAACTATGGGGCCACGCGGCGCAAGCTGGTg  >  3:263675/1‑147 (MQ=255)                                                                                                                                                     CCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGa                                                                                        >  3:1482‑M1/1‑56 (MQ=255)                                                                                                                                                     CCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGa                                                                                        <  4:1482‑M1/56‑1 (MQ=255)                                                                                                                                                     CCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCTGCCAGCCCAACTATGGGGCCAcgc                >  6:102479‑M1/1‑128 (MQ=255)                                                                                                                                                     CCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCTGCCAGCCCAACTATGGGGCCAcgc                <  5:102479‑M1/128‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              ACTGGACCGCCTGCTCAGTGCCGCCAGCAACCCGGACAGCCTGGCCG‑ACGCCAGCGACAGCAGCCTGCTCGACCGCTCGCCGCGCTCGCTGAAGGACGTGTGGACGCGCCTGCGCACCCAGCTCACACCGACCTCGCTGTTGTTCCGCCATGCCTTGCGCCTGCCGCTGGCGCTGTCGATCGGCTATGGCATGGTGCACCTGATTCACCCGACCCAAGGCTACTGGATCATCCTCACCACGCTGTTCGTCTGCCAGCCCAACTATGGGGCCACGCGGCGCAAGCTGGTG  >  NC_002947/5645697‑5645985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.