New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5647616	54 (0.950)	3 (0.060)	3/248	NT	5.5%	intergenic (‑29/‑125)	PP_4955/elaA	hypothetical protein/acetyltransferase
	?	NC_002947	= 5647641	51 (0.940)					intergenic (‑54/‑100)	PP_4955/elaA	hypothetical protein/acetyltransferase

CCCGGCATCTTGGCATCGGTGAACGGTGGCCAGCTATCGGCCACCAGGCGTAGCTTGGCGTGACCCGGGGCAGGTGTTGCCAGCATCGTTGCCAGCAATCCCAGAACACAAAGCAGTGGCCGCATGCTCACGTCCTTTCGCAATGGAGGGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5647463‑5647616 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaacCGCTTTGTGTAATCTCACTGGCAGTGTTGCCCTCCATTGCGAAAGGACGTGAGCATGCGGCCACTGCTTTGTGTTCTGGGATTGCTGGCAACGATGCTGGCAACACCTGCCCCGGGTCACGCCAAGCTACGCCTGGTGGCCGATAGC  <  NC_002947/5647641‑5647495                                                                                                                                                                                                                                                                                                               CCCGGCATCTTGGCATCGGTGAACGGTGGCCAGCTATCGGCCACCAGGCGTAGCTTGGCGTGACCCGGGGCAGGTGTTGCCAGCATCGTTGCCAGCAATCCCAGAACACAAAGCAGTGGCCGCATGCTCACGTCCTTTCGCAATGGAGG                                                                                                                                                          >  2:354827/1‑149                  GGTGAACGGTGGCCAGCTATCGGCCACCAGGCGTAGCTTGGCGTGACCCGGGGCAGGTGTTGCCAGCATCGTTGCCAGCAATCCCAGAACACAAAGCAGTGGCCGCATGCTCACGTCCTTTCGCAATGGAGG                                                                                                                                                          <  3:262602/132‑1                  GGTGAACGGTGGCCAGCTATCGGCCACCAGGCGTAGCTTGGCGTGACCCGGGGCAGGTGTTGCCAGCATCGTTGCCAGCAATCCCAGAACACAAAGCAGTGGCCGCATGCTCACGTCCTTTCGCAATGGAGG                                                                                                                                                          >  4:262602/1‑132                                        GCCACCAGGCGTAGCTTGGCGTGACCCGGGGCAGGTGTTGCCAGCATCGTTGCCAGCAATCCCAGAACACAAAGCAGTGGCCGCATGCTCACGTCCTTTCGCAATGGAGGGCAACCGCTTTGTGTAATCTCACTGGCAGTGTTGCCCTC                                                                                                                   <  1:354827/149‑1                                                                                                   TCCCAGAACACAAAGCAGTGGCCGCATGCTCACGTCCTTTCGCAATGGAGGGCAACCGCTTTGTGTAATCTCACTGGCAGTGTTGCCCT                                                                                                                    <  1:18772/89‑1                                                                                                   TCCCAGAACACAAAGCAGTGGCCGCATGCTCACGTCCTTTCGCAATGGAGGGCAACCGCTTTGTGTAATCTCACTGGCAGTGTTGCCCT                                                                                                                    >  2:18772/1‑89                                                                                                                                                     GGCAACCGCTTTGTGTAATCTCACTGGCAGTGTTGCCCTCCATTGCGAAAGGACGTGAGCATGCGGCCACTGCTTTGTGTTCTGGGATTGCTGGCAACGATGCTGGCAACACCTGCCCCGGGTCACGCCAAGCTACGCCTGGTGGCCGA      <  6:247961/149‑1                                                                                                                                                        AACCGCTTTGTGTAATCTCACTGGCAGTGTTGCCCTCCATTGCGAAAGGACGTGAGCATGCGGACACTGCTTTGTATTCTGGGATTGCTGGCAACGATGCTGGCAACACCTGCCCCGGGTCACGCCAAGCTACGCCTGGTGGCCGA      >  7:235935/1‑146                                                                                                                                                         ACCGCTTTGTGTAATCTCACTGGCAGTGTTGCCCTCCATTGCGAAAGGACGTGAGCATGCGGCCACTGCTTTGTGTTCTGGGATTGCTGGCAACGATGCTGGCAACACCTGCCCCGGGTCACGCCAAGCTACGCCTGGTGGCCGATAGC  <  2:30724/149‑1                                                                                                                                                                                                                                                                                                               CCCGGCATCTTGGCATCGGTGAACGGTGGCCAGCTATCGGCCACCAGGCGTAGCTTGGCGTGACCCGGGGCAGGTGTTGCCAGCATCGTTGCCAGCAATCCCAGAACACAAAGCAGTGGCCGCATGCTCACGTCCTTTCGCAATGGAGGGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5647463‑5647616 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaacCGCTTTGTGTAATCTCACTGGCAGTGTTGCCCTCCATTGCGAAAGGACGTGAGCATGCGGCCACTGCTTTGTGTTCTGGGATTGCTGGCAACGATGCTGGCAACACCTGCCCCGGGTCACGCCAAGCTACGCCTGGTGGCCGATAGC  <  NC_002947/5647641‑5647495

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.