New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5666940	43 (0.760)	5 (0.090)	4/252	NT	8.7%	coding (954/1236 nt)	nhaP	NhaP‑type Na+(K+)/H+ antiporter
	?	NC_002947	= 5666987	63 (1.150)					coding (1001/1236 nt)	nhaP	NhaP‑type Na+(K+)/H+ antiporter

CTGGGGCGCAACCTGGCGATGAATGACATGACCCGCCGTTACATGGACGGTTTCTGGGAGCTGATCGACGACATGCTCAATGCCCTGCTGTTCGCATTGATCGGCCTGGAGCTGTTGCTGCTGCCGTTCAACTGGATGCACCTGGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5666791‑5666940 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccACCGTCAACAGGCGCGACAGCAGCACTGCCAGCGCCAGCACGCCGCCGGCCGCCAGGTGCATCCAGTTGAACGGCAGCAGCAACAGCTCCAGGCCGATCAATGCGAACAGCAGGGCATTGAGCATGTCGTCGATCAGCTCCCAGAAA  <  NC_002947/5666987‑5666841                                                                                                                                                                                                                                                                                                           CTGGGGCGCAACCTGGCGATGAATGACATGACCCGCCGTTACATGGACGGTTTCTGGGAGCTGATCGACGACATGCTCAATGCCCTGCTGTTCGCATTGATCGGCCTGGAGCTGTTGCTGCTGCCGTTCAACTGGATGCACCTGGCGGC                                                                                                                                                      >  1:239155/1‑149                                            TGGACGGTTTCTGGGAGCTGATCGACGACATGCTCAATGCCCTGCTGTTCGCATTGATCGGCCTGGAGCTGTTGCTGCTGCCGTTCAACTGGATGCACCTGGCGGCCACCGTCAACAGGCGCGACAGCAGCACTGCCAGCGCCAGCACG                                                                                                           >  5:291450/1‑149                                                 GGTTTCTGGGAGCTGATCGACGACATGCTCAATGCCCTGCTGTTCGCATTGATCGGCCTGGAGCTGTTGCTGCTGCCGTTCAACTGGATGCACCTGGCGGCCACCGTCAACAGGCGCGACAGCAGCACTGCCAGCGCCAGCACGCCGCC                                                                                                      <  3:47970/149‑1                                                      CTGGGAGCTGATCGACGACATGCTCAATGCCCTGCTGTTCGCATTGATCGGCCTGGAGCTGTTGCTGCTGCCGTTCAACTGGATGCACCTGGCGGCCACCGTCAACAGGCGCGACAGCAGCACTGCCAGCGCCAGCACGCCGCCGGCC                                                                                                  <  2:199100/148‑1                                                      CTGGGAGCTGATCGACGACATGCTCAATGCCCTGCTGTTCGCATTGATCGGCCTGGAGCTGTTGCTGCTGCCGTTCAACTGGATGCACCTGGCGGCCACCGTCAACAGGCGCGACAGCAGCACTGCCAGCGCCAGCACGCCGCCGGCC                                                                                                  <  7:285657/148‑1                                                          GAGCTGATCGACGACATGCTCAATGCCCTGCTGTTCGCATTGATCGGCCTGGAGCTGTTGCTGCTGCCGTTCAACTGGATGCACCTGGCGGCCACCGTCAACAGGCGCGACAGCAGCACTGCCAGCGCCAGCACGCCGCCGGCCGCCAG                                                                                             <  6:291450/149‑1                                                                                                                                                     CCACCGTCAACAGGCGCGACAGCAGCACTGCCAGCGCCAGCACGCCGCCGGCCGCCAGGTGCATCCAGTTGAACGGCAGCAGCAACAGCTCCAGGCCGATCAATGCGAACAGCAGGGCATTGAGCATGTCGTCGATCAGCTCCCAGAAA  <  1:235464/149‑1                                                                                                                                                     CCACCGTCAACAGGCGCGACAGCAGCACTGCCAGCGCCAGCACGCCGCCGGCCGCCAGGTGCATCCAGTTGAACGGCAGCAGCAACAGCTCCAGGCCGATCAATGCGAACAGCAGGGCATTGAGCATGTCGTCGATCAGCTCCCAGAAA  >  2:239155/1‑149                                                                                                                                                     CCACCGTCAACAGGCGCGACAGCAGCACTGCCAGCGCCAGCACGCCGCCGGCCGCCAGGTGCATCCAGTTGAACGGCAGCAGCAACAGCTCCAGGCCGATCAATGCGAACAGCAGGGCATTGAGCATGTCGTCGATCAGCTCCCAGAAA  <  6:163691/149‑1                                                                                                                                                                                                                                                                                                           CTGGGGCGCAACCTGGCGATGAATGACATGACCCGCCGTTACATGGACGGTTTCTGGGAGCTGATCGACGACATGCTCAATGCCCTGCTGTTCGCATTGATCGGCCTGGAGCTGTTGCTGCTGCCGTTCAACTGGATGCACCTGGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5666791‑5666940 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccACCGTCAACAGGCGCGACAGCAGCACTGCCAGCGCCAGCACGCCGCCGGCCGCCAGGTGCATCCAGTTGAACGGCAGCAGCAACAGCTCCAGGCCGATCAATGCGAACAGCAGGGCATTGAGCATGTCGTCGATCAGCTCCCAGAAA  <  NC_002947/5666987‑5666841

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.